Literature DB >> 19245836

Analysis of chromatin remodeling during formation of a DNA double-strand break at the yeast mating type locus.

Toyoko Tsukuda1, Kelly M Trujillo, Emmanuelle Martini, Mary Ann Osley.   

Abstract

DNA repair occurs in a chromatin context, and nucleosome remodeling is now recognized as an important regulatory feature by allowing repair factors access to damaged sites. The yeast mating type locus (MAT) has emerged an excellent model to study the role of chromatin remodeling at a well-defined DNA double-strand break (DSB). We discuss methods to study nucleosome dynamics and DSB repair factor recruitment to the MAT locus after a DSB has been formed.

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Year:  2009        PMID： 19245836      PMCID： PMC2760393          DOI： 10.1016/j.ymeth.2009.02.007

Source DB:  PubMed          Journal:  Methods        ISSN： 1046-2023            Impact factor:   3.608


  53 in total

Review 1.  In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment.

Authors:  M H Kuo; C D Allis
Journal:  Methods       Date:  1999-11       Impact factor: 3.608

2.  Antagonistic remodelling by Swi-Snf and Tup1-Ssn6 of an extensive chromatin region forms the background for FLO1 gene regulation.

Authors:  A B Fleming; S Pennings
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

3.  Dual chromatin remodeling roles for RSC during DNA double strand break induction and repair at the yeast MAT locus.

Authors:  Nicholas A Kent; Anna L Chambers; Jessica A Downs
Journal:  J Biol Chem       Date:  2007-07-25       Impact factor: 5.157

4.  RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins.

Authors:  Niels Mailand; Simon Bekker-Jensen; Helene Faustrup; Fredrik Melander; Jiri Bartek; Claudia Lukas; Jiri Lukas
Journal:  Cell       Date:  2007-11-20       Impact factor: 41.582

5.  RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly.

Authors:  Michael S Y Huen; Robert Grant; Isaac Manke; Kay Minn; Xiaochun Yu; Michael B Yaffe; Junjie Chen
Journal:  Cell       Date:  2007-11-20       Impact factor: 41.582

6.  Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair.

Authors:  Chin-Chuan Chen; Joshua J Carson; Jason Feser; Beth Tamburini; Susan Zabaronick; Jeffrey Linger; Jessica K Tyler
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

Review 7.  Regulation of DNA double-strand break repair pathway choice.

Authors:  Meena Shrivastav; Leyma P De Haro; Jac A Nickoloff
Journal:  Cell Res       Date:  2008-01       Impact factor: 25.617

8.  RSC functions as an early double-strand-break sensor in the cell's response to DNA damage.

Authors:  Bing Liang; Jiajing Qiu; Kajan Ratnakumar; Brehon C Laurent
Journal:  Curr Biol       Date:  2007-08-09       Impact factor: 10.834

9.  Histone methyltransferase Dot1 and Rad9 inhibit single-stranded DNA accumulation at DSBs and uncapped telomeres.

Authors:  Federico Lazzaro; Vasileia Sapountzi; Magda Granata; Achille Pellicioli; Moreshwar Vaze; James E Haber; Paolo Plevani; David Lydall; Marco Muzi-Falconi
Journal:  EMBO J       Date:  2008-04-17       Impact factor: 11.598

10.  Break dosage, cell cycle stage and DNA replication influence DNA double strand break response.

Authors:  Christian Zierhut; John F X Diffley
Journal:  EMBO J       Date:  2008-05-29       Impact factor: 11.598
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  4 in total

1.  Nuclear Hat1p complex (NuB4) components participate in DNA repair-linked chromatin reassembly.

Authors:  Zhongqi Ge; Huanyu Wang; Mark R Parthun
Journal:  J Biol Chem       Date:  2011-03-17       Impact factor: 5.157

Review 2.  Decoding the trans-histone crosstalk: methods to analyze H2B ubiquitination, H3 methylation and their regulatory factors.

Authors:  Mahesh B Chandrasekharan; Fu Huang; Zu-Wen Sun
Journal:  Methods       Date:  2011-03-08       Impact factor: 3.608

3.  The SWI/SNF ATP-dependent nucleosome remodeler promotes resection initiation at a DNA double-strand break in yeast.

Authors:  Nathaniel E Wiest; Scott Houghtaling; Joseph C Sanchez; Alan E Tomkinson; Mary Ann Osley
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

4.  Interaction of yeast Rad51 and Rad52 relieves Rad52-mediated inhibition of de novo telomere addition.

Authors:  Esther A Epum; Michael J Mohan; Nicholas P Ruppe; Katherine L Friedman
Journal:  PLoS Genet       Date:  2020-02-03       Impact factor: 5.917
  4 in total

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