Literature DB >> 19240324

Radiation damage in protein crystals examined under various conditions by different methods.

Elspeth F Garman1, Colin Nave.   

Abstract

Investigation of radiation damage in protein crystals has progressed in several directions over the past couple of years. There have been improvements in the basic procedures such as calibration of the incident X-ray intensity and calculation of the dose likely to be deposited in a crystal of known size and composition with this intensity. There has been increased emphasis on using additional techniques such as optical, Raman or X-ray spectroscopy to complement X-ray diffraction. Apparent discrepancies between the results of different techniques can be explained by the fact that they are sensitive to different length scales or to changes in the electronic state rather than to movement of atoms. Investigations have been carried out at room temperature as well as cryo-temperatures and, in both cases, with the introduction of potential scavenger molecules. These and other studies are leading to an overall description of the changes which can occur when a protein crystal is irradiated with X-rays at both cryo- and room temperatures. Results from crystallographic and spectroscopic radiation-damage experiments can be reconciled with other studies in the field of radiation physics and chemistry.

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Year:  2009        PMID: 19240324     DOI: 10.1107/S0909049509005238

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  16 in total

1.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

2.  Energy calibration issues in nuclear resonant vibrational spectroscopy: observing small spectral shifts and making fast calibrations.

Authors:  Hongxin Wang; Yoshitaka Yoda; Weibing Dong; Songping D Huang
Journal:  J Synchrotron Radiat       Date:  2013-08-17       Impact factor: 2.616

3.  Biochemical Establishment and Characterization of EncM's Flavin-N5-oxide Cofactor.

Authors:  Robin Teufel; Frederick Stull; Michael J Meehan; Quentin Michaudel; Pieter C Dorrestein; Bruce Palfey; Bradley S Moore
Journal:  J Am Chem Soc       Date:  2015-06-19       Impact factor: 15.419

4.  Identification of patterns in diffraction intensities affected by radiation exposure.

Authors:  Dominika Borek; Zbigniew Dauter; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

5.  Towards protein-crystal centering using second-harmonic generation (SHG) microscopy.

Authors:  David J Kissick; Christopher M Dettmar; Michael Becker; Anne M Mulichak; Vadim Cherezov; Stephan L Ginell; Kevin P Battaile; Lisa J Keefe; Robert F Fischetti; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

6.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  The minimum crystal size needed for a complete diffraction data set.

Authors:  James M Holton; Kenneth A Frankel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Determination of kinetics and the crystal structure of a novel type 2 isopentenyl diphosphate: dimethylallyl diphosphate isomerase from Streptococcus pneumoniae.

Authors:  Jerome de Ruyck; Matthew W Janczak; Syam Sundar Neti; Steven C Rothman; Heidi L Schubert; Rita M Cornish; Andre Matagne; Johan Wouters; C Dale Poulter
Journal:  Chembiochem       Date:  2014-06-06       Impact factor: 3.164

Review 9.  Protein structure determination by MicroED.

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Curr Opin Struct Biol       Date:  2014-04-05       Impact factor: 6.809

10.  Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data.

Authors:  Qun Liu; Qinglian Liu; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13
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