Literature DB >> 1923812

Ribosomes containing the C1054-deletion mutation in E. coli 16S rRNA act as suppressors at all three nonsense codons.

C Prescott1, L Krabben, K Nierhaus.   

Abstract

It was established some time ago that the deletion of base C1054 in E. coli 16S rRNA specifically affects UGA-dependent termination of translation. Based on this observation, a model for the termination event was proposed in which the UGA nonsense codon on the mRNA base-pairs with a complementary motif in 'helix 34' of the 16S rRNA, thus potentially providing a recognition signal for the binding of the release factor. This model has been re-examined here and evidence is presented which demonstrates that ribosomes containing the C1054 delta mutation enhance the activity of suppressors of both UAG and UAA termination codons introduced into the host. The results do not support the nonsense codon-16S rRNA base pairing model, and rather imply a more general involvement of 'helix 34' in the translation termination reactions.

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Year:  1991        PMID: 1923812      PMCID: PMC328888          DOI: 10.1093/nar/19.19.5281

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  9 in total

1.  Construction of Escherichia coli amber suppressor tRNA genes. II. Synthesis of additional tRNA genes and improvement of suppressor efficiency.

Authors:  L G Kleina; J M Masson; J Normanly; J Abelson; J H Miller
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

2.  Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension.

Authors:  D Moazed; S Stern; H F Noller
Journal:  J Mol Biol       Date:  1986-02-05       Impact factor: 5.469

3.  Analysis of specific misreading in Escherichia coli.

Authors:  P Strigini; E Brickman
Journal:  J Mol Biol       Date:  1973-04-25       Impact factor: 5.469

4.  The contrasting role of strA and ram gene products in ribosomal functioning.

Authors:  L Gorini
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1969

5.  Regions of DNA involved in the stringent control of plasmid-encoded rRNA in vivo.

Authors:  R L Gourse; M J Stark; A E Dahlberg
Journal:  Cell       Date:  1983-04       Impact factor: 41.582

6.  The role of 2-methylthio-N6-isopentenyladenosine in readthrough and suppression of nonsense codons in Escherichia coli.

Authors:  L A Petrullo; P J Gallagher; D Elseviers
Journal:  Mol Gen Genet       Date:  1983

7.  Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

Authors:  J Brosius; T J Dull; D D Sleeter; H F Noller
Journal:  J Mol Biol       Date:  1981-05-15       Impact factor: 5.469

8.  Mutant 16S ribosomal RNA: a codon-specific translational suppressor.

Authors:  E J Murgola; K A Hijazi; H U Göringer; A E Dahlberg
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

9.  Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli.

Authors:  P Maly; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1983-11-11       Impact factor: 16.971

  9 in total
  8 in total

1.  Mutations in E.coli 16s rRNA that enhance and decrease the activity of a suppressor tRNA.

Authors:  C D Prescott; H C Kornau
Journal:  Nucleic Acids Res       Date:  1992-04-11       Impact factor: 16.971

Review 2.  Evolutionary conservation of reactions in translation.

Authors:  M Clelia Ganoza; Michael C Kiel; Hiroyuki Aoki
Journal:  Microbiol Mol Biol Rev       Date:  2002-09       Impact factor: 11.056

3.  Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons.

Authors:  Lance Harrell; Ulrich Melcher; John F Atkins
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

Review 4.  Termination of protein synthesis.

Authors:  M F Tuite; I Stansfield
Journal:  Mol Biol Rep       Date:  1994-05       Impact factor: 2.316

5.  The translational function of nucleotide C1054 in the small subunit rRNA is conserved throughout evolution: genetic evidence in yeast.

Authors:  Y O Chernoff; G P Newnam; S W Liebman
Journal:  Proc Natl Acad Sci U S A       Date:  1996-03-19       Impact factor: 11.205

6.  Two regions of the Escherichia coli 16S ribosomal RNA are important for decoding stop signals in polypeptide chain termination.

Authors:  C M Brown; K K McCaughan; W P Tate
Journal:  Nucleic Acids Res       Date:  1993-05-11       Impact factor: 16.971

7.  Distinct functional classes of ram mutations in 16S rRNA.

Authors:  Sean P McClory; Aishwarya Devaraj; Kurt Fredrick
Journal:  RNA       Date:  2014-02-26       Impact factor: 4.942

8.  The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.

Authors:  Cajetan Neubauer; Yong-Gui Gao; Kasper R Andersen; Christine M Dunham; Ann C Kelley; Jendrik Hentschel; Kenn Gerdes; V Ramakrishnan; Ditlev E Brodersen
Journal:  Cell       Date:  2009-12-11       Impact factor: 41.582

  8 in total

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