Literature DB >> 19216931

Evaluation and comparison of computational models.

Jay I Myung1, Yun Tang, Mark A Pitt.   

Abstract

Computational models are powerful tools that can enhance the understanding of scientific phenomena. The enterprise of modeling is most productive when the reasons underlying the adequacy of a model, and possibly its superiority to other models, are understood. This chapter begins with an overview of the main criteria that must be considered in model evaluation and selection, in particular explaining why generalizability is the preferred criterion for model selection. This is followed by a review of measures of generalizability. The final section demonstrates the use of five versatile and easy-to-use selection methods for choosing between two mathematical models of protein folding.

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Year:  2009        PMID: 19216931      PMCID: PMC2704205          DOI: 10.1016/S0076-6879(08)03811-1

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  14 in total

1.  The Importance of Complexity in Model Selection.

Authors: 
Journal:  J Math Psychol       Date:  2000-03       Impact factor: 2.223

2.  Bayesian Model Selection and Model Averaging.

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Journal:  J Math Psychol       Date:  2000-03       Impact factor: 2.223

3.  Akaike's Information Criterion and Recent Developments in Information Complexity.

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Journal:  J Math Psychol       Date:  2000-03       Impact factor: 2.223

4.  GUEST EDITORS' INTRODUCTION.

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Journal:  J Math Psychol       Date:  2000-03       Impact factor: 2.223

Review 5.  Analysis of circular dichroism data.

Authors:  Norma J Greenfield
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

6.  Modeling the word recognition data of Vitevitch and Luce (1998): is it ARTful?

Authors:  Mark A Pitt; Jay I Myung; Nicholas Altieri
Journal:  Psychon Bull Rev       Date:  2007-06

7.  Global model analysis by parameter space partitioning.

Authors:  Mark A Pitt; Woojae Kim; Daniel J Navarro; Jay I Myung
Journal:  Psychol Rev       Date:  2006-01       Impact factor: 8.934

8.  Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water.

Authors:  J M Scholtz; H Qian; E J York; J M Stewart; R L Baldwin
Journal:  Biopolymers       Date:  1991-11       Impact factor: 2.505

9.  Determining globular protein stability: guanidine hydrochloride denaturation of myoglobin.

Authors:  C N Pace; K E Vanderburg
Journal:  Biochemistry       Date:  1979-01-23       Impact factor: 3.162

10.  Urea unfolding of peptide helices as a model for interpreting protein unfolding.

Authors:  J M Scholtz; D Barrick; E J York; J M Stewart; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-03       Impact factor: 11.205

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  7 in total

1.  Analysis of a dual domain phosphoglycosyl transferase reveals a ping-pong mechanism with a covalent enzyme intermediate.

Authors:  Debasis Das; Petr Kuzmic; Barbara Imperiali
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

2.  Structure guided fluorescence labeling reveals a two-step binding mechanism of neomycin to its RNA aptamer.

Authors:  Henrik Gustmann; Anna-Lena J Segler; Dnyaneshwar B Gophane; Andreas J Reuss; Christian Grünewald; Markus Braun; Julia E Weigand; Snorri Th Sigurdsson; Josef Wachtveitl
Journal:  Nucleic Acids Res       Date:  2019-01-10       Impact factor: 16.971

Review 3.  An introduction to NMR-based approaches for measuring protein dynamics.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  Biochim Biophys Acta       Date:  2010-11-06

4.  Temporal prediction errors modulate task-switching performance.

Authors:  Roberto Limongi; Angélica M Silva; Begoña Góngora-Costa
Journal:  Front Psychol       Date:  2015-08-25

5.  Parameter Inference for Computational Cognitive Models with Approximate Bayesian Computation.

Authors:  Antti Kangasrääsiö; Jussi P P Jokinen; Antti Oulasvirta; Andrew Howes; Samuel Kaski
Journal:  Cogn Sci       Date:  2019-06

6.  Role of the Substrate Specificity-Defining Residues of Human SIRT5 in Modulating the Structural Stability and Inhibitory Features of the Enzyme.

Authors:  Junru Yu; Manas Haldar; Sanku Mallik; D K Srivastava
Journal:  PLoS One       Date:  2016-03-29       Impact factor: 3.240

7.  Biochemical screening for SARS-CoV-2 main protease inhibitors.

Authors:  Camila Coelho; Gloria Gallo; Claudia B Campos; Leon Hardy; Martin Würtele
Journal:  PLoS One       Date:  2020-10-06       Impact factor: 3.240

  7 in total

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