Literature DB >> 28630348

Analysis of a dual domain phosphoglycosyl transferase reveals a ping-pong mechanism with a covalent enzyme intermediate.

Debasis Das1,2, Petr Kuzmic3, Barbara Imperiali4,2.   

Abstract

Phosphoglycosyl transferases (PGTs) are integral membrane proteins with diverse architectures that catalyze the formation of polyprenol diphosphate-linked glycans via phosphosugar transfer from a nucleotide diphosphate-sugar to a polyprenol phosphate. There are two PGT superfamilies that differ significantly in overall structure and topology. The polytopic PGT superfamily, represented by MraY and WecA, has been the subject of many studies because of its roles in peptidoglycan and O-antigen biosynthesis. In contrast, less is known about a second, extensive superfamily of PGTs that reveals a core structure with dual domain architecture featuring a C-terminal soluble globular domain and a predicted N-terminal membrane-associated domain. Representative members of this superfamily are the Campylobacter PglCs, which initiate N-linked glycoprotein biosynthesis and are implicated in virulence and pathogenicity. Despite the prevalence of dual domain PGTs, their mechanism of action is unknown. Here, we present the mechanistic analysis of PglC, a prototypic dual domain PGT from Campylobacter concisus Using a luminescence-based assay, together with substrate labeling and kinetics-based approaches, complementary experiments were carried out that support a ping-pong mechanism involving a covalent phosphosugar intermediate for PglC. Significantly, mass spectrometry-based approaches identified Asp93, which is part of a highly conserved AspGlu dyad found in all dual domain PGTs, as the active-site nucleophile of the enzyme involved in the formation of the covalent adduct. The existence of a covalent phosphosugar intermediate provides strong support for a ping-pong mechanism of PglC, differing fundamentally from the ternary complex mechanisms of representative polytopic PGTs.

Entities:  

Keywords:  covalent intermediate; dual domain PGT; glycoconjugate biosynthesis; membrane protein; phosphoglycosyl transferase

Mesh:

Substances:

Year:  2017        PMID: 28630348      PMCID: PMC5502628          DOI: 10.1073/pnas.1703397114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

1.  Evidence for phosphotransferases phosphorylated on aspartate residue in N-terminal DXDX(T/V) motif.

Authors:  Jean-François Collet; Vincent Stroobant; Emile Van Schaftingen
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

2.  Crystal structure of MraY, an essential membrane enzyme for bacterial cell wall synthesis.

Authors:  Jinshi Zhao; Robert A Gillespie; Ben C Chung; Do-Yeon Kwon; Ziqiang Guan; Jiyong Hong; Pei Zhou; Seok-Yong Lee
Journal:  Science       Date:  2013-08-30       Impact factor: 47.728

Review 3.  Analogies and homologies in lipopolysaccharide and glycoprotein biosynthesis in bacteria.

Authors:  Isabelle Hug; Mario F Feldman
Journal:  Glycobiology       Date:  2010-09-24       Impact factor: 4.313

4.  A new class of phosphotransferases phosphorylated on an aspartate residue in an amino-terminal DXDX(T/V) motif.

Authors:  J F Collet; V Stroobant; M Pirard; G Delpierre; E Van Schaftingen
Journal:  J Biol Chem       Date:  1998-06-05       Impact factor: 5.157

5.  Biosynthesis of enterobacterial common antigen in Escherichia coli. Biochemical characterization of Tn10 insertion mutants defective in enterobacterial common antigen synthesis.

Authors:  U Meier-Dieter; R Starman; K Barr; H Mayer; P D Rick
Journal:  J Biol Chem       Date:  1990-08-15       Impact factor: 5.157

6.  Mechanisms of activation of phosphoenolpyruvate carboxykinase from Escherichia coli by Ca2+ and of desensitization by trypsin.

Authors:  Athena Sudom; Robert Walters; Landon Pastushok; Douglas Goldie; Lata Prasad; Louis T J Delbaere; Hughes Goldie
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

Review 7.  The dolichol pathway of N-linked glycosylation.

Authors:  P Burda; M Aebi
Journal:  Biochim Biophys Acta       Date:  1999-01-06

8.  Purification and characterization of the bacterial UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase WecA.

Authors:  Bayan Al-Dabbagh; Dominique Mengin-Lecreulx; Ahmed Bouhss
Journal:  J Bacteriol       Date:  2008-08-22       Impact factor: 3.490

9.  Structural Investigation of Park's Nucleotide on Bacterial Translocase MraY: Discovery of Unexpected MraY Inhibitors.

Authors:  Kuo-Ting Chen; Po-Ting Chen; Cheng-Kun Lin; Lin-Ya Huang; Chia-Ming Hu; Yi-Fan Chang; Hua-Ting Hsu; Ting-Jen R Cheng; Ying-Ta Wu; Wei-Chieh Cheng
Journal:  Sci Rep       Date:  2016-08-17       Impact factor: 4.379

10.  A Rapid and Efficient Luminescence-based Method for Assaying Phosphoglycosyltransferase Enzymes.

Authors:  Debasis Das; Marthe T C Walvoort; Vinita Lukose; Barbara Imperiali
Journal:  Sci Rep       Date:  2016-09-14       Impact factor: 4.379

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  13 in total

1.  General Utilization of Fluorescent Polyisoprenoids with Sugar Selective Phosphoglycosyltransferases.

Authors:  Amanda J Reid; Beth A Scarbrough; Tiffany C Williams; Claire E Gates; Colleen R Eade; Jerry M Troutman
Journal:  Biochemistry       Date:  2020-01-07       Impact factor: 3.162

2.  Investigation of the conserved reentrant membrane helix in the monotopic phosphoglycosyl transferase superfamily supports key molecular interactions with polyprenol phosphate substrates.

Authors:  Sonya Entova; Ziqiang Guan; Barbara Imperiali
Journal:  Arch Biochem Biophys       Date:  2019-09-26       Impact factor: 4.013

Review 3.  Stereochemical Divergence of Polyprenol Phosphate Glycosyltransferases.

Authors:  Jerry Eichler; Barbara Imperiali
Journal:  Trends Biochem Sci       Date:  2017-11-25       Impact factor: 13.807

Review 4.  Bacterial phosphoglycosyl transferases: initiators of glycan biosynthesis at the membrane interface.

Authors:  Vinita Lukose; Marthe T C Walvoort; Barbara Imperiali
Journal:  Glycobiology       Date:  2017-09-01       Impact factor: 4.313

Review 5.  Structural and mechanistic themes in glycoconjugate biosynthesis at membrane interfaces.

Authors:  Karen N Allen; Barbara Imperiali
Journal:  Curr Opin Struct Biol       Date:  2019-04-16       Impact factor: 6.809

Review 6.  Monotopic Membrane Proteins Join the Fold.

Authors:  Karen N Allen; Sonya Entova; Leah C Ray; Barbara Imperiali
Journal:  Trends Biochem Sci       Date:  2018-10-15       Impact factor: 13.807

7.  Glycoconjugate pathway connections revealed by sequence similarity network analysis of the monotopic phosphoglycosyl transferases.

Authors:  Katherine H O'Toole; Barbara Imperiali; Karen N Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-26       Impact factor: 12.779

Review 8.  The surprising structural and mechanistic dichotomy of membrane-associated phosphoglycosyl transferases.

Authors:  Katherine H O'Toole; Hannah M Bernstein; Karen N Allen; Barbara Imperiali
Journal:  Biochem Soc Trans       Date:  2021-06-30       Impact factor: 4.919

9.  Tracking Colanic Acid Repeat Unit Formation from Stepwise Biosynthesis Inactivation in Escherichia coli.

Authors:  Amanda J Reid; Colleen R Eade; Kyle J Jones; Matthew A Jorgenson; Jerry M Troutman
Journal:  Biochemistry       Date:  2021-06-23       Impact factor: 3.321

10.  Insights into the key determinants of membrane protein topology enable the identification of new monotopic folds.

Authors:  Sonya Entova; Jean-Marc Billod; Jean-Marie Swiecicki; Sonsoles Martín-Santamaría; Barbara Imperiali
Journal:  Elife       Date:  2018-08-31       Impact factor: 8.140

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