Literature DB >> 19215787

Uniparentalism in sporadic colorectal cancer is independent of imprint status, and coordinate for chromosomes 14 and 18.

Huferesh K Darbary1, Smitha S Dutt, Sheila J Sait, Norma J Nowak, Roy E Heinaman, Daniel L Stoler, Garth R Anderson.   

Abstract

Our previous allelotyping studies of 59 sporadic colorectal cancers revealed that loss of heterozygosity is most frequent for regions of chromosomes 14 and 18. Yet subsequent BAC microarray comparative genomic hybridization studies of the same tumor DNAs showed no corresponding pattern of copy number alteration for chromosome 14. To clarify this apparent discrepancy, we utilized hybridization to SNP microarrays; this revealed frequent uniparentalism for chromosome 14 and for chromosome 18. Based on the BAC array results combined with fluorescent in situ hybridization data, it was evident that uniparental disomy was occurring in many colorectal cancers as well as in additional chromosomes, and often coordinately involved chromosomes 14 and 18. Further studies examined the possibility that uniparentalism was directed towards the selection for imprinted genes, but no association with imprinting was observed.

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Year:  2009        PMID: 19215787      PMCID: PMC2666006          DOI: 10.1016/j.cancergencyto.2008.10.011

Source DB:  PubMed          Journal:  Cancer Genet Cytogenet        ISSN: 0165-4608


  43 in total

Review 1.  Genomic imprinting and cancer; new paradigms in the genetics of neoplasia.

Authors:  P N Schofield; J A Joyce; W K Lam; V Grandjean; A Ferguson-Smith; W Reik; E R Maher
Journal:  Toxicol Lett       Date:  2001-03-31       Impact factor: 4.372

2.  The onset and extent of genomic instability in sporadic colorectal tumor progression.

Authors:  D L Stoler; N Chen; M Basik; M S Kahlenberg; M A Rodriguez-Bigas; N J Petrelli; G R Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

Review 3.  Mechanisms leading to uniparental disomy and their clinical consequences.

Authors:  W P Robinson
Journal:  Bioessays       Date:  2000-05       Impact factor: 4.345

4.  Genome-wide single-nucleotide polymorphism analysis in juvenile myelomonocytic leukemia identifies uniparental disomy surrounding the NF1 locus in cases associated with neurofibromatosis but not in cases with mutant RAS or PTPN11.

Authors:  C Flotho; D Steinemann; C G Mullighan; G Neale; K Mayer; C P Kratz; B Schlegelberger; J R Downing; C M Niemeyer
Journal:  Oncogene       Date:  2007-03-12       Impact factor: 9.867

5.  Chromosomal lesions and uniparental disomy detected by SNP arrays in MDS, MDS/MPD, and MDS-derived AML.

Authors:  Lukasz P Gondek; Ramon Tiu; Christine L O'Keefe; Mikkael A Sekeres; Karl S Theil; Jaroslaw P Maciejewski
Journal:  Blood       Date:  2007-10-22       Impact factor: 22.113

6.  SNP-Array genotyping and spectral karyotyping reveal uniparental disomy as early mutational event in MSS- and MSI-colorectal cancer cell lines.

Authors:  R Melcher; O Al-Taie; T Kudlich; E Hartmann; S Maisch; C Steinlein; M Schmid; A Rosenwald; T Menzel; W Scheppach; H Luhrs
Journal:  Cytogenet Genome Res       Date:  2007       Impact factor: 1.636

7.  Comprehensive analysis of copy number and allele status identifies multiple chromosome defects underlying follicular lymphoma pathogenesis.

Authors:  Charles W Ross; Peter D Ouillette; Chris M Saddler; Kerby A Shedden; Sami N Malek
Journal:  Clin Cancer Res       Date:  2007-08-15       Impact factor: 12.531

8.  Genome-wide detection of recurring sites of uniparental disomy in follicular and transformed follicular lymphoma.

Authors:  J Fitzgibbon; S Iqbal; A Davies; D O'shea; E Carlotti; T Chaplin; J Matthews; M Raghavan; A Norton; T A Lister; B D Young
Journal:  Leukemia       Date:  2007-05-10       Impact factor: 11.528

9.  Genome-wide analysis of neuroblastomas using high-density single nucleotide polymorphism arrays.

Authors:  Rani E George; Edward F Attiyeh; Shuli Li; Lisa A Moreau; Donna Neuberg; Cheng Li; Edward A Fox; Matthew Meyerson; Lisa Diller; Paolo Fortina; A Thomas Look; John M Maris
Journal:  PLoS One       Date:  2007-02-28       Impact factor: 3.240

10.  SNP array karyotyping allows for the detection of uniparental disomy and cryptic chromosomal abnormalities in MDS/MPD-U and MPD.

Authors:  Lukasz P Gondek; Andrew J Dunbar; Hadrian Szpurka; Michael A McDevitt; Jaroslaw P Maciejewski
Journal:  PLoS One       Date:  2007-11-21       Impact factor: 3.240

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  4 in total

1.  Integrated analysis of genome-wide copy number alterations and gene expression in microsatellite stable, CpG island methylator phenotype-negative colon cancer.

Authors:  Lenora W M Loo; Maarit Tiirikainen; Iona Cheng; Annette Lum-Jones; Ann Seifried; James M Church; Robert Gryfe; Daniel J Weisenberger; Noralane M Lindor; Steven Gallinger; Robert W Haile; David J Duggan; Stephen N Thibodeau; Graham Casey; Loïc Le Marchand
Journal:  Genes Chromosomes Cancer       Date:  2013-01-23       Impact factor: 5.006

Review 2.  Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer.

Authors:  Raj Chari; Kelsie L Thu; Ian M Wilson; William W Lockwood; Kim M Lonergan; Bradley P Coe; Chad A Malloff; Adi F Gazdar; Stephen Lam; Cathie Garnis; Calum E MacAulay; Carlos E Alvarez; Wan L Lam
Journal:  Cancer Metastasis Rev       Date:  2010-03       Impact factor: 9.264

3.  Copy-neutral loss of heterozygosity and chromosome gains and losses are frequent in gastrointestinal stromal tumors.

Authors:  Nelson Lourenço; Zofia Hélias-Rodzewicz; Jean-Baptiste Bachet; Sabrina Brahimi-Adouane; Fabrice Jardin; Jeanne Tran van Nhieu; Frédérique Peschaud; Emmanuel Martin; Alain Beauchet; Frédéric Chibon; Jean-François Emile
Journal:  Mol Cancer       Date:  2014-11-06       Impact factor: 27.401

4.  Soft tissue sarcoma subtypes exhibit distinct patterns of acquired uniparental disomy.

Authors:  Musaffe Tuna; Zhenlin Ju; Christopher I Amos; Gordon B Mills
Journal:  BMC Med Genomics       Date:  2012-12-05       Impact factor: 3.063

  4 in total

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