Literature DB >> 19215296

Systems biology: parameter estimation for biochemical models.

Maksat Ashyraliyev1, Yves Fomekong-Nanfack, Jaap A Kaandorp, Joke G Blom.   

Abstract

Mathematical models of biological processes have various applications: to assist in understanding the functioning of a system, to simulate experiments before actually performing them, to study situations that cannot be dealt with experimentally, etc. Some parameters in the model can be directly obtained from experiments or from the literature. Others have to be inferred by comparing model results to experiments. In this minireview, we discuss the identifiability of models, both intrinsic to the model and taking into account the available data. Furthermore, we give an overview of the most frequently used approaches to search the parameter space.

Mesh:

Year:  2009        PMID: 19215296     DOI: 10.1111/j.1742-4658.2008.06844.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  99 in total

Review 1.  Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories.

Authors:  S Vinga; A R Neves; H Santos; B W Brandt; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

Review 2.  Computational systems biology of cellular processes in Arabidopsis thaliana: an overview.

Authors:  Pascal Holzheu; Ursula Kummer
Journal:  Cell Mol Life Sci       Date:  2019-11-25       Impact factor: 9.261

3.  In situ parameter identification of optimal density-elastic modulus relationships in subject-specific finite element models of the proximal femur.

Authors:  Alexander Cong; Jorn Op Den Buijs; Dan Dragomir-Daescu
Journal:  Med Eng Phys       Date:  2010-10-27       Impact factor: 2.242

4.  Hybrid modelling of biological systems using fuzzy continuous Petri nets.

Authors:  Fei Liu; Wujie Sun; Monika Heiner; David Gilbert
Journal:  Brief Bioinform       Date:  2021-01-18       Impact factor: 11.622

Review 5.  Qualitative Modeling, Analysis and Control of Synthetic Regulatory Circuits.

Authors:  Madalena Chaves; Hidde de Jong
Journal:  Methods Mol Biol       Date:  2021

6.  From Physics to Pharmacology?

Authors:  Richard J Allen; Timothy C Elston
Journal:  Rep Prog Phys       Date:  2011-01

7.  Quantitative Systems Pharmacology: A Framework for Context.

Authors:  Ioannis P Androulakis
Journal:  Curr Pharmacol Rep       Date:  2016-04-08

8.  When the optimal is not the best: parameter estimation in complex biological models.

Authors:  Diego Fernández Slezak; Cecilia Suárez; Guillermo A Cecchi; Guillermo Marshall; Gustavo Stolovitzky
Journal:  PLoS One       Date:  2010-10-25       Impact factor: 3.240

9.  A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides.

Authors:  Mark A J Roberts; Elias August; Abdullah Hamadeh; Philip K Maini; Patrick E McSharry; Judith P Armitage; Antonis Papachristodoulou
Journal:  BMC Syst Biol       Date:  2009-10-31

10.  Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis.

Authors:  Yves Fomekong-Nanfack; Marten Postma; Jaap A Kaandorp
Journal:  BMC Syst Biol       Date:  2009-09-21
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