Literature DB >> 19214729

Whole genome sequencing of lamb rotavirus and comparative analysis with other mammalian rotaviruses.

Yanjun Chen1, Weiwen Zhu, Shuo Sui, Yuxin Yin, Songnian Hu, Xiaowei Zhang.   

Abstract

Rotavirus (RV) epidemiological surveys with molecular analysis of various strains are required for gastroenteritis control and prevention. The lamb rotavirus strain NT, isolated from a diarrhea lamb in China, is considered as a promising vaccine strain. The whole genome of the lamb-NT strain was determined by sequence analysis. Sequence identity and phylogenetic analysis defined the lamb-NT strain as group A, genotype G10P[15]/NSP4[A]/SG1 strain. Comparative genomic analysis of the lamb-NT strain and 17 reference strains reveals that gene reassortments between rotaviruses circulating in different species occurred. Alignment of protein sequences of the genes shows some variations in the important functional regions of VP3 and VP4. These variations are related to host range restriction, virulence, and other potential characters of rotaviruses. Besides, this study also makes a significant foundation for the study of genetic classification, epidemiology, and antigenic diversity of rotaviruses on the molecular level.

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Year:  2009        PMID： 19214729     DOI： 10.1007/s11262-009-0332-7

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  51 in total

1.  Molecular characterization of rotavirus in Ireland: detection of novel strains circulating in the population.

Authors:  F O'Halloran; M Lynch; B Cryan; H O'Shea; S Fanning
Journal:  J Clin Microbiol       Date:  2000-09       Impact factor: 5.948

2.  Epitope mapping of the major inner capsid protein of group A rotavirus using peptide synthesis.

Authors:  E Kohli; L Maurice; C Bourgeois; J B Bour; P Pothier
Journal:  Virology       Date:  1993-05       Impact factor: 3.616

3.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Nucleotide and amino acid sequence analysis of the rotavirus nonstructural RNA-binding protein NS35.

Authors:  J T Patton; L Salter-Cid; A Kalbach; E A Mansell; M Kattoura
Journal:  Virology       Date:  1993-02       Impact factor: 3.616

5.  Rotavirus open cores catalyze 5'-capping and methylation of exogenous RNA: evidence that VP3 is a methyltransferase.

Authors:  D Chen; C L Luongo; M L Nibert; J T Patton
Journal:  Virology       Date:  1999-12-05       Impact factor: 3.616

6.  Characterization of rotavirus guanylyltransferase activity associated with polypeptide VP3.

Authors:  J L Pizarro; A M Sandino; J M Pizarro; J Fernández; E Spencer
Journal:  J Gen Virol       Date:  1991-02       Impact factor: 3.891

7.  Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains.

Authors:  Jelle Matthijnssens; Max Ciarlet; Erica Heiman; Ingrid Arijs; Thomas Delbeke; Sarah M McDonald; Enzo A Palombo; Miren Iturriza-Gómara; Piet Maes; John T Patton; Mustafizur Rahman; Marc Van Ranst
Journal:  J Virol       Date:  2008-01-23       Impact factor: 5.103

8.  Molecular characterization of group A human rotaviruses in Bangkok and Buriram, Thailand during 2004-2006 reveals the predominance of G1P[8], G9P[8] and a rare G3P[19] strain.

Authors:  Apiradee Theamboonlers; Parvapan Bhattarakosol; Voranush Chongsrisawat; Thrissawan Sungkapalee; Norra Wutthirattanakowit; Yong Poovorawan
Journal:  Virus Genes       Date:  2008-01-29       Impact factor: 2.332

Review 9.  Burden of disease & molecular epidemiology of group A rotavirus infections in India.

Authors:  Sasirekha Ramani; Gagandeep Kang
Journal:  Indian J Med Res       Date:  2007-05       Impact factor: 2.375

10.  Conserved structural features of nonstructural glycoprotein NSP4 between group A and group C rotaviruses.

Authors:  Y Horie; T Nakagomi; M Oseto; O Masamune; O Nakagomi
Journal:  Arch Virol       Date:  1997       Impact factor: 2.574
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  6 in total

1.  Exotic rotaviruses in animals and rotaviruses in exotic animals.

Authors:  Souvik Ghosh; Nobumichi Kobayashi
Journal:  Virusdisease       Date:  2014-02-13

2.  Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG).

Authors:  Jelle Matthijnssens; Max Ciarlet; Sarah M McDonald; Houssam Attoui; Krisztián Bányai; J Rodney Brister; Javier Buesa; Mathew D Esona; Mary K Estes; Jon R Gentsch; Miren Iturriza-Gómara; Reimar Johne; Carl D Kirkwood; Vito Martella; Peter P C Mertens; Osamu Nakagomi; Viviana Parreño; Mustafizur Rahman; Franco M Ruggeri; Linda J Saif; Norma Santos; Andrej Steyer; Koki Taniguchi; John T Patton; Ulrich Desselberger; Marc Van Ranst
Journal:  Arch Virol       Date:  2011-05-20       Impact factor: 2.574

3.  Rotavirus strains in neglected animal species including lambs, goats and camelids.

Authors:  Hajnalka Papp; Yashpal S Malik; Szilvia L Farkas; Ferenc Jakab; Vito Martella; Krisztián Bányai
Journal:  Virusdisease       Date:  2014-05-14

Review 4.  Ovine rotaviruses.

Authors:  S Gazal; I A Mir; A Iqbal; A K Taku; B Kumar; M A Bhat
Journal:  Open Vet J       Date:  2011-12-22

5.  Ovine rotavirus strain LLR-85-based bovine rotavirus candidate vaccines: construction, characterization and immunogenicity evaluation.

Authors:  Ji-Tao Chang; Xin Li; Hai-Jun Liu; Li Yu
Journal:  Vet Microbiol       Date:  2010-04-29       Impact factor: 3.293

6.  Genomic Analysis of an Indian G8P[1] Caprine Rotavirus-A Strain Revealing Artiodactyl and DS-1-Like Human Multispecies Reassortment.

Authors:  Shubhankar Sircar; Yashpal Singh Malik; Prashant Kumar; Mohd Ikram Ansari; Sudipta Bhat; S Shanmuganathan; Jobin Jose Kattoor; O R Vinodhkumar; Narayan Rishi; Nadia Touil; Souvik Ghosh; Krisztián Bányai; Kuldeep Dhama
Journal:  Front Vet Sci       Date:  2021-01-27
  6 in total

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