Literature DB >> 19195996

Oxygen isotope effects as probes of electron transfer mechanisms and structures of activated O2.

Justine P Roth1.   

Abstract

Competitively determined oxygen ((18)O) isotope effects can be powerful probes of chemical and biological transformations involving molecular oxygen as well as superoxide and hydrogen peroxide. They play a complementary role to crystallography and spectroscopy in the study of activated oxygen intermediates by forging a link between electronic/vibrational structure and the bonding that occurs within ground and transition states along the reaction coordinate. Such analyses can be used to assess the plausibility of intermediates and their catalytic relevance in oxidative processes. This Account describes efforts to advance oxygen kinetic isotope effects ((18)O KIEs) and equilibrium isotope effects ((18)O EIEs) as mechanistic probes of reactive, oxygen-derived species. We focus primarily on transition metal mediated oxidations, outlining both advances over the past five years and current limitations of this approach. Computational methods are now being developed to probe transition states and the accompanying kinetic isotope effects. In particular, we describe the importance of using a full-frequency model to accurately predict the magnitudes as well as the temperature dependence of the isotope effects. Earlier studies have used a "cut-off model," which employs only a few isotopic vibrational modes, and such models tend to overestimate (18)O EIEs. Researchers in mechanistic biological inorganic chemistry would like to differentiate "inner-sphere" from "outer-sphere" reactivity of O(2), a designation that describes the extent of the bonding interaction between metal and oxygen in the transition state. Though this problem remains unsolved, we expect that this isotopic approach will help differentiate these processes. For example, comparisons of (18)O KIEs to (18)O EIEs provide benchmarks that allow us to calibrate computationally derived reaction coordinates. Once the physical origins of heavy atom isotope effects are better understood, researchers will be able to apply the competitive isotope fractionation technique to a wide range of pressing problems in small molecule chemistry and biochemistry.

Entities:  

Year:  2009        PMID: 19195996     DOI: 10.1021/ar800169z

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  9 in total

1.  Ion desolvation as a mechanism for kinetic isotope fractionation in aqueous systems.

Authors:  Amy E Hofmann; Ian C Bourg; Donald J DePaolo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

2.  Monooxygenase Substrates Mimic Flavin to Catalyze Cofactorless Oxygenations.

Authors:  Melodie M Machovina; Robert J Usselman; Jennifer L DuBois
Journal:  J Biol Chem       Date:  2016-06-15       Impact factor: 5.157

3.  A common late-stage intermediate in catalysis by 2-hydroxyethyl-phosphonate dioxygenase and methylphosphonate synthase.

Authors:  Spencer C Peck; Jonathan R Chekan; Emily C Ulrich; Satish K Nair; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2015-02-26       Impact factor: 15.419

Review 4.  Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes.

Authors:  Spencer C Peck; Wilfred A van der Donk
Journal:  J Biol Inorg Chem       Date:  2016-10-25       Impact factor: 3.358

5.  Substrate-Specific Coupling of O2 Activation to Hydroxylations of Aromatic Compounds by Rieske Non-heme Iron Dioxygenases.

Authors:  Sarah G Pati; Charlotte E Bopp; Hans-Peter E Kohler; Thomas B Hofstetter
Journal:  ACS Catal       Date:  2022-05-16       Impact factor: 13.700

6.  A Revised Mechanism for Human Cyclooxygenase-2.

Authors:  Yi Liu; Justine P Roth
Journal:  J Biol Chem       Date:  2015-11-12       Impact factor: 5.157

7.  Perylene Diimide as a Precise Graphene-like Superoxide Dismutase Mimetic.

Authors:  Almaz S Jalilov; Lizanne G Nilewski; Vladimir Berka; Chenhao Zhang; Andrey A Yakovenko; Gang Wu; Thomas A Kent; Ah-Lim Tsai; James M Tour
Journal:  ACS Nano       Date:  2017-01-31       Impact factor: 15.881

8.  Managing argon interference during measurements of 18O/16O ratios in O2 by continuous-flow isotope ratio mass spectrometry.

Authors:  Charlotte E Bopp; Jakov Bolotin; Sarah G Pati; Thomas B Hofstetter
Journal:  Anal Bioanal Chem       Date:  2022-07-16       Impact factor: 4.478

9.  Elucidating the Role of O2 Uncoupling in the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme Iron Dioxygenases.

Authors:  Charlotte E Bopp; Nora M Bernet; Hans-Peter E Kohler; Thomas B Hofstetter
Journal:  ACS Environ Au       Date:  2022-07-07
  9 in total

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