Literature DB >> 19193644

Portrait of an enzyme, a complete structural analysis of a multimodular {beta}-N-acetylglucosaminidase from Clostridium perfringens.

Elizabeth Ficko-Blean1, Katie J Gregg, Jarrett J Adams, Jan-Hendrik Hehemann, Mirjam Czjzek, Steven P Smith, Alisdair B Boraston.   

Abstract

Common features of the extracellular carbohydrate-active virulence factors involved in host-pathogen interactions are their large sizes and modular complexities. This has made them recalcitrant to structural analysis, and therefore our understanding of the significance of modularity in these important proteins is lagging. Clostridium perfringens is a prevalent human pathogen that harbors a wide array of large, extracellular carbohydrate-active enzymes and is an excellent and relevant model system to approach this problem. Here we describe the complete structure of C. perfringens GH84C (NagJ), a 1001-amino acid multimodular homolog of the C. perfringens micro-toxin, which was determined using a combination of small angle x-ray scattering and x-ray crystallography. The resulting structure reveals unprecedented insight into how catalysis, carbohydrate-specific adherence, and the formation of molecular complexes with other enzymes via an ultra-tight protein-protein interaction are spatially coordinated in an enzyme involved in a host-pathogen interaction.

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Year:  2009        PMID: 19193644      PMCID: PMC2665110          DOI: 10.1074/jbc.M808954200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  49 in total

1.  Purification, crystallization and preliminary crystallographic studies of a two fibronectin type-III domain segment from chicken tenascin encompassing the heparin- and contactin-binding regions.

Authors:  D Bisig; P Weber; L Vaughan; K H Winterhalter; K Piontek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-05

2.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

3.  Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.

Authors:  Garry S A Myers; David A Rasko; Jackie K Cheung; Jacques Ravel; Rekha Seshadri; Robert T DeBoy; Qinghu Ren; John Varga; Milena M Awad; Lauren M Brinkac; Sean C Daugherty; Daniel H Haft; Robert J Dodson; Ramana Madupu; William C Nelson; M J Rosovitz; Steven A Sullivan; Hoda Khouri; George I Dimitrov; Kisha L Watkins; Stephanie Mulligan; Jonathan Benton; Diana Radune; Derek J Fisher; Helen S Atkins; Tom Hiscox; B Helen Jost; Stephen J Billington; J Glenn Songer; Bruce A McClane; Richard W Titball; Julian I Rood; Stephen B Melville; Ian T Paulsen
Journal:  Genome Res       Date:  2006-07-06       Impact factor: 9.043

4.  2.0 A crystal structure of a four-domain segment of human fibronectin encompassing the RGD loop and synergy region.

Authors:  D J Leahy; I Aukhil; H P Erickson
Journal:  Cell       Date:  1996-01-12       Impact factor: 41.582

5.  A cellular deficiency of gangliosides causes hypersensitivity to Clostridium perfringens phospholipase C.

Authors:  Marietta Flores-Díaz; Alberto Alape-Girón; Graeme Clark; Bruno Catimel; Yoshio Hirabayashi; Ed Nice; José-María Gutiérrez; Richard Titball; Monica Thelestam
Journal:  J Biol Chem       Date:  2005-05-26       Impact factor: 5.157

6.  Three-dimensional structure of a putative non-cellulosomal cohesin module from a Clostridium perfringens family 84 glycoside hydrolase.

Authors:  Seth Chitayat; Katie Gregg; Jarrett J Adams; Elizabeth Ficko-Blean; Edward A Bayer; Alisdair B Boraston; Steven P Smith
Journal:  J Mol Biol       Date:  2007-10-17       Impact factor: 5.469

7.  The role of clostridial toxins in the pathogenesis of gas gangrene.

Authors:  Dennis L Stevens; Amy E Bryant
Journal:  Clin Infect Dis       Date:  2002-09-01       Impact factor: 9.079

8.  Carbohydrate recognition by a large sialidase toxin from Clostridium perfringens.

Authors:  Alisdair B Boraston; Elizabeth Ficko-Blean; Michael Healey
Journal:  Biochemistry       Date:  2007-09-13       Impact factor: 3.162

Review 9.  The role of complex carbohydrate catabolism in the pathogenesis of invasive streptococci.

Authors:  Samuel A Shelburne; Michael T Davenport; David B Keith; James M Musser
Journal:  Trends Microbiol       Date:  2008-05-27       Impact factor: 17.079

10.  Crystallization of a fragment of human fibronectin: introduction of methionine by site-directed mutagenesis to allow phasing via selenomethionine.

Authors:  D J Leahy; H P Erickson; I Aukhil; P Joshi; W A Hendrickson
Journal:  Proteins       Date:  1994-05
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  15 in total

1.  Structure of a fibronectin type III-like module from Clostridium thermocellum.

Authors:  Markus Alahuhta; Qi Xu; Roman Brunecky; William S Adney; Shi-You Ding; Michael E Himmel; Vladimir V Lunin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-07-27

2.  Structural and functional analysis of four family 84 glycoside hydrolases from the opportunistic pathogen Clostridium perfringens.

Authors:  Benjamin Pluvinage; Patricia M Massel; Kristyn Burak; Alisdair B Boraston
Journal:  Glycobiology       Date:  2019-12-12       Impact factor: 4.313

3.  Glycoside hydrolase family 89 alpha-N-acetylglucosaminidase from Clostridium perfringens specifically acts on GlcNAc alpha1,4Gal beta1R at the non-reducing terminus of O-glycans in gastric mucin.

Authors:  Masaya Fujita; Akiko Tsuchida; Akiko Hirata; Natsumi Kobayashi; Kohtaro Goto; Kenji Osumi; Yuriko Hirose; Jun Nakayama; Takashi Yamanoi; Hisashi Ashida; Mamoru Mizuno
Journal:  J Biol Chem       Date:  2010-12-21       Impact factor: 5.157

4.  Structural analysis of a bacterial exo-α-D-N-acetylglucosaminidase in complex with an unusual disaccharide found in class III mucin.

Authors:  Elizabeth Ficko-Blean; Alisdair B Boraston
Journal:  Glycobiology       Date:  2011-11-16       Impact factor: 4.313

Review 5.  Cell Surface Xyloglucan Recognition and Hydrolysis by the Human Gut Commensal Bacteroides uniformis.

Authors:  Julie M Grondin; Guillaume Déjean; Filip Van Petegem; Harry Brumer
Journal:  Appl Environ Microbiol       Date:  2021-11-03       Impact factor: 5.005

6.  Screening-based discovery of drug-like O-GlcNAcase inhibitor scaffolds.

Authors:  Helge C Dorfmueller; Daan M F van Aalten
Journal:  FEBS Lett       Date:  2009-12-16       Impact factor: 4.124

7.  N-acetylglucosamine recognition by a family 32 carbohydrate-binding module from Clostridium perfringens NagH.

Authors:  Elizabeth Ficko-Blean; Alisdair B Boraston
Journal:  J Mol Biol       Date:  2009-05-05       Impact factor: 5.469

8.  Substrate and product analogues as human O-GlcNAc transferase inhibitors.

Authors:  Helge C Dorfmueller; Vladimir S Borodkin; David E Blair; Shalini Pathak; Iva Navratilova; Daan M F van Aalten
Journal:  Amino Acids       Date:  2010-07-17       Impact factor: 3.520

9.  A proteomic and cellular analysis of uropods in the pathogen Entamoeba histolytica.

Authors:  Jacques Marquay Markiewicz; Sylvie Syan; Chung-Chau Hon; Christian Weber; Daniela Faust; Nancy Guillen
Journal:  PLoS Negl Trop Dis       Date:  2011-04-05

10.  Carbohydrate recognition by an architecturally complex α-N-acetylglucosaminidase from Clostridium perfringens.

Authors:  Elizabeth Ficko-Blean; Christopher P Stuart; Michael D Suits; Melissa Cid; Matthew Tessier; Robert J Woods; Alisdair B Boraston
Journal:  PLoS One       Date:  2012-03-27       Impact factor: 3.240

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