Literature DB >> 19193015

Multidimensional exploration of valley-ridge inflection points on potential-energy surfaces.

April N Sheppard1, Orlando Acevedo.   

Abstract

The ene reaction between singlet oxygen ((1)O(2)) and simple alkenes has been reported as the first experimentally supported example of a potential-energy surface (PES) featuring a valley-ridge inflection that contributes to the selectivity of product formation (J. Am. Chem. Soc. 2003, 125, 1319-1328). That PES, based on gas-phase ab initio calculations and experimental kinetic isotope effects, has shaped the current (1)O(2) ene mechanism by advocating a concerted "two-step no-intermediate" mechanism. Our current investigation of the ene reaction between (1)O(2) and tetramethylethylene in water, DMSO, and cyclohexane using novel 3-dimensional potentials of mean force (3-D PMF) calculations coupled to QM/MM simulations predicts an alternative free-energy surface that supports a traditional stepwise mechanism interpretation featuring a symmetric charge-separated perepoxide intermediate. Solvent polarity dictates the stability of the intermediate and controls the activation barrier for ene product formation. Transformation of the higher order condensed-phase 3-D PMF potential-energy surface, computed following three simultaneous reaction coordinates, into a downgraded 2-D surface results in the "two-step no-intermediate" mechanism. CCSD(T) and MP4(SDQ) free-energy maps in DMSO, constructed from a 3-D grid of B3LYP geometries using the CPCM solvent model, reproduce the QM/MM results and confirm that when solvent is taken into account the gas-phase bifurcation reaction pathway converts into a stepwise mechanism. This manuscript provides new insight into the biologically and synthetically important (1)O(2) ene reaction and highlights a new multidimensional approach for constructing potential-energy surfaces.

Entities:  

Year:  2009        PMID: 19193015     DOI: 10.1021/ja803879k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Quantum and Molecular Mechanical (QM/MM) Monte Carlo Techniques for Modeling Condensed-Phase Reactions.

Authors:  Orlando Acevedo; Wiliiam L Jorgensen
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2014-09

2.  Biosynthetic consequences of multiple sequential post-transition-state bifurcations.

Authors:  Young Joo Hong; Dean J Tantillo
Journal:  Nat Chem       Date:  2014-01-19       Impact factor: 24.427

3.  Natural product biosynthesis: It's all downhill from here.

Authors:  Charles E Hornsby; Robert S Paton
Journal:  Nat Chem       Date:  2014-02       Impact factor: 24.427

4.  Theoretical study of the reaction formalhydrazone with singlet oxygen. Fragmentation of the C=N bond, ene reaction and other processes.

Authors:  Benjamin Rudshteyn; Alvaro Castillo; Ashwini A Ghogare; Joel F Liebman; Alexander Greer
Journal:  Photochem Photobiol       Date:  2013-12-02       Impact factor: 3.421

5.  Stereochemistry of hydrogen removal during oxygenation of linoleic acid by singlet oxygen and synthesis of 11(S)-deuterium-labeled linoleic acid.

Authors:  Mats Hamberg
Journal:  Lipids       Date:  2010-12-16       Impact factor: 1.880

6.  Screening and characterization of a nitrilase with significant nitrile hydratase activity.

Authors:  Ke Zhang; Tingze Pan; Liuzhu Wang; Hualei Wang; Yuhong Ren; Dongzhi Wei
Journal:  Biotechnol Lett       Date:  2022-09-01       Impact factor: 2.716

7.  Air-Water Interface Effects on the Regioselectivity of Singlet Oxygenations of a Trisubstituted Alkene.

Authors:  Belaid Malek; Ashwini A Ghogare; Rajib Choudhury; Alexander Greer
Journal:  Tetrahedron Lett       Date:  2015-07-22       Impact factor: 2.415

8.  Advances in quantum and molecular mechanical (QM/MM) simulations for organic and enzymatic reactions.

Authors:  Orlando Acevedo; William L Jorgensen
Journal:  Acc Chem Res       Date:  2010-01-19       Impact factor: 22.384

9.  Catalytic mechanism of cellulose degradation by a cellobiohydrolase, CelS.

Authors:  Moumita Saharay; Hong Guo; Jeremy C Smith
Journal:  PLoS One       Date:  2010-10-12       Impact factor: 3.240

10.  Effects of solvents on the DACBO-catalyzed vinylogous Henry reaction of isatin with 3,5-dimethyl-4-nitroisoxazole "on-water" and in solution from QM/MM MC simulations.

Authors:  Lian Yang; Jianming Zhao; Xin Yang; Ming Chen; Ying Xue
Journal:  RSC Adv       Date:  2019-02-08       Impact factor: 4.036

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