Literature DB >> 19187282

Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions.

Adam C Martiny1, Ying Huang, Weizhong Li.   

Abstract

The cyanobacterium Prochlorococcus is the numerically dominant phototroph in oligotrophic parts of the oceans. Recently, it was shown that the distribution of phosphate acquisition genes did not match the 16S rRNA phylogeny among isolates from this group but rather appeared related to phosphate availability where the strains had been isolated. To further understand adaptation to phosphate limitation in Prochlorococcus, the distribution of phosphate acquisition genes was investigated in different ocean regions and related to local ortho-phosphate concentration. In regions characterized by less than 0.1 microM phosphate, most Prochlorococcus cells contain genes involved in phosphate uptake, regulation and utilization of organic phosphates. In contrast, most of these genes are absent in regions with more than 0.1 microM phosphate with the exception of genes involved in transport of phosphate (phoE and pstABCS) and three genes of unknown function. This pattern of phosphate acquisition genes showed no significant correspondence to the distribution of rRNA phylotypes. In addition, it was demonstrated that several genes in a separate genomic island were commonly present in low-P sites while absent in high-P sites. Overall, this study further demonstrates a linkage between environmental conditions in the ocean and genome content of Prochlorococcus.

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Year:  2009        PMID: 19187282     DOI: 10.1111/j.1462-2920.2009.01860.x

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  57 in total

1.  Characterization of Prochlorococcus clades from iron-depleted oceanic regions.

Authors:  Douglas B Rusch; Adam C Martiny; Christopher L Dupont; Aaron L Halpern; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

2.  Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families.

Authors:  Prianka V Patel; Tara A Gianoulis; Robert D Bjornson; Kevin Y Yip; Donald M Engelman; Mark B Gerstein
Journal:  Genome Res       Date:  2010-04-29       Impact factor: 9.043

3.  A novel clade of Prochlorococcus found in high nutrient low chlorophyll waters in the South and Equatorial Pacific Ocean.

Authors:  Nyree J West; Philippe Lebaron; Pete G Strutton; Marcelino T Suzuki
Journal:  ISME J       Date:  2010-12-02       Impact factor: 10.302

4.  Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean.

Authors:  Yanmei Shi; Gene W Tyson; John M Eppley; Edward F DeLong
Journal:  ISME J       Date:  2010-12-09       Impact factor: 10.302

5.  Ecosystem-specific selection pressures revealed through comparative population genomics.

Authors:  Maureen L Coleman; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

6.  High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection.

Authors:  Jeroen De Smet; Michael Zimmermann; Maria Kogadeeva; Pieter-Jan Ceyssens; Wesley Vermaelen; Bob Blasdel; Ho Bin Jang; Uwe Sauer; Rob Lavigne
Journal:  ISME J       Date:  2016-02-16       Impact factor: 10.302

7.  Global biogeography of Prochlorococcus genome diversity in the surface ocean.

Authors:  Alyssa G Kent; Chris L Dupont; Shibu Yooseph; Adam C Martiny
Journal:  ISME J       Date:  2016-02-02       Impact factor: 10.302

Review 8.  Ecological genomics of marine picocyanobacteria.

Authors:  D J Scanlan; M Ostrowski; S Mazard; A Dufresne; L Garczarek; W R Hess; A F Post; M Hagemann; I Paulsen; F Partensky
Journal:  Microbiol Mol Biol Rev       Date:  2009-06       Impact factor: 11.056

9.  From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Authors:  Ave Tooming-Klunderud; Hanne Sogge; Trine Ballestad Rounge; Alexander J Nederbragt; Karin Lagesen; Gernot Glöckner; Paul K Hayes; Thomas Rohrlack; Kjetill S Jakobsen
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

10.  Development and bias assessment of a method for targeted metagenomic sequencing of marine cyanobacteria.

Authors:  Cécilia S Batmalle; Hsin-I Chiang; Kun Zhang; Michael W Lomas; Adam C Martiny
Journal:  Appl Environ Microbiol       Date:  2013-12-02       Impact factor: 4.792

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