Literature DB >> 19185572

Identification of the ice-binding face of a plant antifreeze protein.

Adam J Middleton1, Alan M Brown, Peter L Davies, Virginia K Walker.   

Abstract

The antifreeze protein of Lolium perenne, a perennial ryegrass, was previously modeled as a beta-roll with two extensive flat beta-sheets on opposite sides of the molecule. Here we have validated the model with a series of nine site-directed steric mutations in which outward-pointing short side-chain residues were replaced by tyrosine. None of these disrupted the fold. Mutations on one of the beta-sheets and on the sides of the protein retained 70% or greater activity. Three mutations that clustered on the other flat surface lost up to 90% of their antifreeze activity and identify this beta-sheet as the ice-binding face.

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Year:  2009        PMID: 19185572     DOI: 10.1016/j.febslet.2009.01.035

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  22 in total

1.  Structural basis for antifreeze activity of ice-binding protein from arctic yeast.

Authors:  Jun Hyuck Lee; Ae Kyung Park; Hackwon Do; Kyoung Sun Park; Sang Hyun Moh; Young Min Chi; Hak Jun Kim
Journal:  J Biol Chem       Date:  2012-02-02       Impact factor: 5.157

2.  Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation.

Authors:  Hidemasa Kondo; Yuichi Hanada; Hiroshi Sugimoto; Tamotsu Hoshino; Christopher P Garnham; Peter L Davies; Sakae Tsuda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

3.  Ice recrystallization inhibition proteins of perennial ryegrass enhance freezing tolerance.

Authors:  Chunzhen Zhang; Shui-zhang Fei; Rajeev Arora; David J Hannapel
Journal:  Planta       Date:  2010-04-09       Impact factor: 4.116

Review 4.  The superfamily of thaumatin-like proteins: its origin, evolution, and expression towards biological function.

Authors:  Jun-Jun Liu; Rona Sturrock; Abul K M Ekramoddoullah
Journal:  Plant Cell Rep       Date:  2010-03-05       Impact factor: 4.570

Review 5.  Antifreeze proteins enable plants to survive in freezing conditions.

Authors:  Ravi Gupta; Renu Deswal
Journal:  J Biosci       Date:  2014-12       Impact factor: 1.826

6.  Identification of Plant Ice-binding Proteins Through Assessment of Ice-recrystallization Inhibition and Isolation Using Ice-affinity Purification.

Authors:  Melissa Bredow; Heather E Tomalty; Virginia K Walker
Journal:  J Vis Exp       Date:  2017-05-05       Impact factor: 1.355

7.  Determining the ice-binding planes of antifreeze proteins by fluorescence-based ice plane affinity.

Authors:  Koli Basu; Christopher P Garnham; Yoshiyuki Nishimiya; Sakae Tsuda; Ido Braslavsky; Peter Davies
Journal:  J Vis Exp       Date:  2014-01-15       Impact factor: 1.355

8.  Towards the selection of a produced water enrichment for biological gas hydrate inhibitors.

Authors:  Sandra L Wilson; Gerrit Voordouw; Virginia K Walker
Journal:  Environ Sci Pollut Res Int       Date:  2014-05-13       Impact factor: 4.223

Review 9.  Modeling repetitive, non-globular proteins.

Authors:  Koli Basu; Robert L Campbell; Shuaiqi Guo; Tianjun Sun; Peter L Davies
Journal:  Protein Sci       Date:  2016-03-16       Impact factor: 6.725

10.  Towards a green hydrate inhibitor: imaging antifreeze proteins on clathrates.

Authors:  Raimond Gordienko; Hiroshi Ohno; Vinay K Singh; Zongchao Jia; John A Ripmeester; Virginia K Walker
Journal:  PLoS One       Date:  2010-02-11       Impact factor: 3.240

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