Literature DB >> 19182939

Two-dimensional infrared spectroscopy provides evidence of an intermediate in the membrane-catalyzed assembly of diabetic amyloid.

Yun L Ling1, David B Strasfeld, Sang-Hee Shim, Daniel P Raleigh, Martin T Zanni.   

Abstract

Islet amyloid polypeptide (IAPP, also known as amylin) is responsible for pancreatic amyloid deposits in type 2 diabetes. The deposits, as well as intermediates in their assembly, are cytotoxic to pancreatic beta-cells and contribute to the loss of beta-cell mass associated with type 2 diabetes. The factors that trigger islet amyloid deposition in vivo are not well understood, but peptide membrane interactions have been postulated to play an important role in islet amyloid formation. To better understand the role of membrane interactions in amyloid formation, two-dimensional infrared (2D IR) spectroscopy was used to compare the kinetics of amyloid formation for human IAPP both in the presence and in the absence of negatively charged lipid vesicles. Comparison of spectral features and kinetic traces from the two sets of experiments provides evidence for the formation of an ordered intermediate during the membrane-mediated assembly of IAPP amyloid. A characteristic transient spectral feature is detected during amyloid formation in the presence of vesicles that is not observed in the absence of vesicles. The spectral feature associated with the intermediate raises in intensity during the self-assembly process and subsequently decays in intensity in the classic manner of a kinetic intermediate. Studies with rat IAPP, a variant that is known to interact with membranes but does not form amyloid, confirm the presence of an intermediate. The analysis of 2D IR spectra in terms of specific structural features is discussed. The unique combination of time and secondary structure resolution of 2D IR spectroscopy has enabled the time-evolution of a hIAPP intermediate to be directly monitored for the first time. The data presented here demonstrates the utility of 2D IR spectroscopy for studying membrane-catalyzed amyloid formation.

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Year:  2009        PMID: 19182939      PMCID: PMC2692222          DOI: 10.1021/jp810261x

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  34 in total

1.  Site-specific vibrational dynamics of the CD3zeta membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy.

Authors:  Prabuddha Mukherjee; Amber T Krummel; Eric C Fulmer; Itamar Kass; Isaiah T Arkin; Martin T Zanni
Journal:  J Chem Phys       Date:  2004-06-01       Impact factor: 3.488

2.  Picosecond dynamics of a membrane protein revealed by 2D IR.

Authors:  Prabuddha Mukherjee; Itamar Kass; Isaiah T Arkin; Isaiah Arkin; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

3.  Localisation of islet amyloid peptide in lipofuscin bodies and secretory granules of human B-cells and in islets of type-2 diabetic subjects.

Authors:  A Clark; C A Edwards; L R Ostle; R Sutton; J B Rothbard; J F Morris; R C Turner
Journal:  Cell Tissue Res       Date:  1989-07       Impact factor: 5.249

4.  Protofibrillar islet amyloid polypeptide permeabilizes synthetic vesicles by a pore-like mechanism that may be relevant to type II diabetes.

Authors:  Magdalena Anguiano; Richard J Nowak; Peter T Lansbury
Journal:  Biochemistry       Date:  2002-09-24       Impact factor: 3.162

Review 5.  How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping.

Authors:  Sang-Hee Shim; Martin T Zanni
Journal:  Phys Chem Chem Phys       Date:  2008-12-10       Impact factor: 3.676

6.  Structural characterisation of islet amyloid polypeptide fibrils.

Authors:  O Sumner Makin; Louise C Serpell
Journal:  J Mol Biol       Date:  2004-01-30       Impact factor: 5.469

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Authors:  A Lorenzo; B Razzaboni; G C Weir; B A Yankner
Journal:  Nature       Date:  1994-04-21       Impact factor: 49.962

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Authors:  T A Mirzabekov; M C Lin; B L Kagan
Journal:  J Biol Chem       Date:  1996-01-26       Impact factor: 5.157

9.  Promotion of beta-structure by interaction of diabetes associated polypeptide (amylin) with phosphatidylcholine.

Authors:  L R McLean; A Balasubramaniam
Journal:  Biochim Biophys Acta       Date:  1992-08-21

10.  The organization of aromatic side groups in an amyloid fibril probed by solid-state 2H and 19F NMR spectroscopy.

Authors:  Edward Jack; Matthew Newsome; Peter G Stockley; Sheena E Radford; David A Middleton
Journal:  J Am Chem Soc       Date:  2006-06-28       Impact factor: 15.419

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  36 in total

1.  The sulfated triphenyl methane derivative acid fuchsin is a potent inhibitor of amyloid formation by human islet amyloid polypeptide and protects against the toxic effects of amyloid formation.

Authors:  Fanling Meng; Andisheh Abedini; Annette Plesner; Chris T Middleton; Kathryn J Potter; Martin T Zanni; C Bruce Verchere; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2010-05-07       Impact factor: 5.469

2.  Stable and metastable states of human amylin in solution.

Authors:  Allam S Reddy; Lu Wang; Sadanand Singh; Yun L Ling; Lauren Buchanan; Martin T Zanni; James L Skinner; Juan J de Pablo
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

3.  Single-molecule fluorescence spectroscopy using phospholipid bilayer nanodiscs.

Authors:  Abhinav Nath; Adam J Trexler; Peter Koo; Andrew D Miranker; William M Atkins; Elizabeth Rhoades
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

4.  Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy.

Authors:  Chris T Middleton; Ann Marie Woys; Sudipta S Mukherjee; Martin T Zanni
Journal:  Methods       Date:  2010-05-22       Impact factor: 3.608

5.  Solution structures of rat amylin peptide: simulation, theory, and experiment.

Authors:  Allam S Reddy; Lu Wang; Yu-Shan Lin; Yun Ling; Manan Chopra; Martin T Zanni; James L Skinner; Juan J De Pablo
Journal:  Biophys J       Date:  2010-02-03       Impact factor: 4.033

6.  2DIR spectroscopy of human amylin fibrils reflects stable β-sheet structure.

Authors:  Lu Wang; Chris T Middleton; Sadanand Singh; Allam S Reddy; Ann M Woys; David B Strasfeld; Peter Marek; Daniel P Raleigh; Juan J de Pablo; Martin T Zanni; James L Skinner
Journal:  J Am Chem Soc       Date:  2011-09-15       Impact factor: 15.419

7.  Structure and membrane orientation of IAPP in its natively amidated form at physiological pH in a membrane environment.

Authors:  Ravi Prakash Reddy Nanga; Jeffrey R Brender; Subramanian Vivekanandan; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta       Date:  2011-06-23

8.  A membrane-bound antiparallel dimer of rat islet amyloid polypeptide.

Authors:  Abhinav Nath; Andrew D Miranker; Elizabeth Rhoades
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-22       Impact factor: 15.336

Review 9.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

10.  Strategies for extracting structural information from 2D IR spectroscopy of amyloid: application to islet amyloid polypeptide.

Authors:  David B Strasfeld; Yun L Ling; Ruchi Gupta; Daniel P Raleigh; Martin T Zanni
Journal:  J Phys Chem B       Date:  2009-11-26       Impact factor: 2.991

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