Literature DB >> 19181830

Diverse and novel nifH and nifH-like gene sequences in the deep-sea methane seep sediments of the Okhotsk Sea.

Hongyue Dang1, Xiwu Luan, Jingyi Zhao, Jing Li.   

Abstract

Diverse nifH and nifH-like gene sequences were obtained from the deep-sea surface sediments of the methane hydrate-bearing Okhotsk Sea. Some sequences formed novel families of the NifH or NifH-like proteins, of currently unresolved bacterial or archaeal origin. Comparison with other marine environments indicates environmental specificity of some of the sequences, either unique to the methane seep sediments of the Okhotsk Sea or to the general deep-sea methane seep sedimentary environments.

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Year:  2009        PMID: 19181830      PMCID: PMC2663232          DOI: 10.1128/AEM.02556-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  27 in total

1.  Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes.

Authors:  H Dang; C R Lovell
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

2.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

3.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

4.  Incidence of novel and potentially archaeal nitrogenase genes in the deep Northeast Pacific Ocean.

Authors:  Mausmi P Mehta; Julie A Huber; John A Baross
Journal:  Environ Microbiol       Date:  2005-10       Impact factor: 5.491

5.  Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

Authors:  Fumio Inagaki; Takuro Nunoura; Satoshi Nakagawa; Andreas Teske; Mark Lever; Antje Lauer; Masae Suzuki; Ken Takai; Mark Delwiche; Frederick S Colwell; Kenneth H Nealson; Koki Horikoshi; Steven D'Hondt; Bo B Jørgensen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

6.  Structure of ADP x AIF4(-)-stabilized nitrogenase complex and its implications for signal transduction.

Authors:  H Schindelin; C Kisker; J L Schlessman; J B Howard; D C Rees
Journal:  Nature       Date:  1997-05-22       Impact factor: 49.962

7.  nifH sequences and nitrogen fixation in type I and type II methanotrophs.

Authors:  A J Auman; C C Speake; M E Lidstrom
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

Review 8.  Nitrate reduction and the nitrogen cycle in archaea.

Authors:  Purificación Cabello; M Dolores Roldán; Conrado Moreno-Vivián
Journal:  Microbiology       Date:  2004-11       Impact factor: 2.777

9.  Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea.

Authors:  Hongyue Dang; Xiaoxia Zhang; Jin Sun; Tiegang Li; Zhinan Zhang; Guanpin Yang
Journal:  Microbiology       Date:  2008-07       Impact factor: 2.777

Review 10.  Nitrogen fixation in methanogens: the archaeal perspective.

Authors:  J A Leigh
Journal:  Curr Issues Mol Biol       Date:  2000-10       Impact factor: 2.081

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  26 in total

1.  Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China.

Authors:  Hongyue Dang; Ruipeng Chen; Lin Wang; Lizhong Guo; Pingping Chen; Zuwang Tang; Fang Tian; Shaozheng Li; Martin G Klotz
Journal:  Appl Environ Microbiol       Date:  2010-09-10       Impact factor: 4.792

2.  Community structure of archaea from deep-sea sediments of the South China Sea.

Authors:  Peng Wang; Tao Li; Anyi Hu; Yuli Wei; Wenting Guo; Nianzhi Jiao; Chuanlun Zhang
Journal:  Microb Ecol       Date:  2010-10-01       Impact factor: 4.552

3.  Molecular characterization of potential nitrogen fixation by anaerobic methane-oxidizing archaea in the methane seep sediments at the number 8 Kumano Knoll in the Kumano Basin, offshore of Japan.

Authors:  Junichi Miyazaki; Ryosaku Higa; Tomohiro Toki; Juichiro Ashi; Urumu Tsunogai; Takuro Nunoura; Hiroyuki Imachi; Ken Takai
Journal:  Appl Environ Microbiol       Date:  2009-09-25       Impact factor: 4.792

4.  Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: analyses of marker gene abundance with physical chemical parameters.

Authors:  Yi-Guo Hong; Meng Li; Huiluo Cao; Ji-Dong Gu
Journal:  Microb Ecol       Date:  2011-04-14       Impact factor: 4.552

5.  Diversity and community structure of archaea in deep subsurface sediments from the tropical Western pacific.

Authors:  Wei Zhang; Gaowa Saren; Tiegang Li; Xinke Yu; Linbao Zhang
Journal:  Curr Microbiol       Date:  2009-12-19       Impact factor: 2.188

Review 6.  Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed.

Authors:  Jennifer D Rocca; Edward K Hall; Jay T Lennon; Sarah E Evans; Mark P Waldrop; James B Cotner; Diana R Nemergut; Emily B Graham; Matthew D Wallenstein
Journal:  ISME J       Date:  2014-12-23       Impact factor: 10.302

7.  Corals form characteristic associations with symbiotic nitrogen-fixing bacteria.

Authors:  Kimberley A Lema; Bette L Willis; David G Bourne
Journal:  Appl Environ Microbiol       Date:  2012-02-17       Impact factor: 4.792

8.  Environment-dependent distribution of the sediment nifH-harboring microbiota in the Northern South China Sea.

Authors:  Hongyue Dang; Jinying Yang; Jing Li; Xiwu Luan; Yunbo Zhang; Guizhou Gu; Rongrong Xue; Mingyue Zong; Martin G Klotz
Journal:  Appl Environ Microbiol       Date:  2012-10-12       Impact factor: 4.792

9.  The marine nitrogen cycle: recent discoveries, uncertainties and the potential relevance of climate change.

Authors:  Maren Voss; Hermann W Bange; Joachim W Dippner; Jack J Middelburg; Joseph P Montoya; Bess Ward
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-05-27       Impact factor: 6.237

10.  Methanogens Are Major Contributors to Nitrogen Fixation in Soils of the Florida Everglades.

Authors:  Hee-Sung Bae; Elise Morrison; Jeffrey P Chanton; Andrew Ogram
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

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