Literature DB >> 19180090

Recombineering: a homologous recombination-based method of genetic engineering.

Shyam K Sharan1, Lynn C Thomason, Sergey G Kuznetsov, Donald L Court.   

Abstract

Recombineering is an efficient method of in vivo genetic engineering applicable to chromosomal as well as episomal replicons in Escherichia coli. This method circumvents the need for most standard in vitro cloning techniques. Recombineering allows construction of DNA molecules with precise junctions without constraints being imposed by restriction enzyme site location. Bacteriophage homologous recombination proteins catalyze these recombineering reactions using double- and single-stranded linear DNA substrates, so-called targeting constructs, introduced by electroporation. Gene knockouts, deletions and point mutations are readily made, gene tags can be inserted and regions of bacterial artificial chromosomes or the E. coli genome can be subcloned by gene retrieval using recombineering. Most of these constructs can be made within about 1 week's time.

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Year:  2009        PMID: 19180090      PMCID: PMC2790811          DOI: 10.1038/nprot.2008.227

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  50 in total

1.  Rapid engineering of bacterial artificial chromosomes using oligonucleotides.

Authors:  S Swaminathan; H M Ellis; L S Waters; D Yu; E C Lee; D L Court; S K Sharan
Journal:  Genesis       Date:  2001-01       Impact factor: 2.487

2.  An efficient recombination system for chromosome engineering in Escherichia coli.

Authors:  D Yu; H M Ellis; E C Lee; N A Jenkins; N G Copeland; D L Court
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  Cell toxicity caused by products of the p(L) operon of bacteriophage lambda.

Authors:  K Sergueev; D Yu; S Austin; D Court
Journal:  Gene       Date:  2001-07-11       Impact factor: 3.688

Review 4.  Recombineering: a powerful new tool for mouse functional genomics.

Authors:  N G Copeland; N A Jenkins; D L Court
Journal:  Nat Rev Genet       Date:  2001-10       Impact factor: 53.242

5.  High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides.

Authors:  H M Ellis; D Yu; T DiTizio; D L Court
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-29       Impact factor: 11.205

6.  A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA.

Authors:  E C Lee; D Yu; J Martinez de Velasco; L Tessarollo; D A Swing; D L Court; N A Jenkins; N G Copeland
Journal:  Genomics       Date:  2001-04-01       Impact factor: 5.736

7.  DNA cloning by homologous recombination in Escherichia coli.

Authors:  Y Zhang; J P Muyrers; G Testa; A F Stewart
Journal:  Nat Biotechnol       Date:  2000-12       Impact factor: 54.908

Review 8.  Genetic engineering using homologous recombination.

Authors:  Donald L Court; James A Sawitzke; Lynn C Thomason
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

9.  PCR-mediated gene replacement in Escherichia coli.

Authors:  K C Murphy; K G Campellone; A R Poteete
Journal:  Gene       Date:  2000-04-04       Impact factor: 3.688

10.  A highly efficient recombineering-based method for generating conditional knockout mutations.

Authors:  Pentao Liu; Nancy A Jenkins; Neal G Copeland
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

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  271 in total

1.  Generating gene knockout rats by homologous recombination in embryonic stem cells.

Authors:  Chang Tong; Guanyi Huang; Charles Ashton; Ping Li; Qi-Long Ying
Journal:  Nat Protoc       Date:  2011-05-26       Impact factor: 13.491

2.  H-NS regulation of IraD and IraM antiadaptors for control of RpoS degradation.

Authors:  A Battesti; Y M Tsegaye; D G Packer; N Majdalani; S Gottesman
Journal:  J Bacteriol       Date:  2012-03-09       Impact factor: 3.490

3.  Strategy for directing combinatorial genome engineering in Escherichia coli.

Authors:  Nicholas R Sandoval; Jaoon Y H Kim; Tirzah Y Glebes; Philippa J Reeder; Hanna R Aucoin; Joseph R Warner; Ryan T Gill
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

4.  Lambda red recombineering in Escherichia coli occurs through a fully single-stranded intermediate.

Authors:  J A Mosberg; M J Lajoie; G M Church
Journal:  Genetics       Date:  2010-09-02       Impact factor: 4.562

Review 5.  Functional analysis of human BRCA2 variants using a mouse embryonic stem cell-based assay.

Authors:  Sergey G Kuznetsov; Suhwan Chang; Shyam K Sharan
Journal:  Methods Mol Biol       Date:  2010

6.  Regulated proteolysis of a cross-link-specific peptidoglycan hydrolase contributes to bacterial morphogenesis.

Authors:  Santosh Kumar Singh; Sadiya Parveen; L SaiSree; Manjula Reddy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

7.  DksA regulates RNA polymerase in Escherichia coli through a network of interactions in the secondary channel that includes Sequence Insertion 1.

Authors:  Andrey Parshin; Anthony L Shiver; Jookyung Lee; Maria Ozerova; Dina Schneidman-Duhovny; Carol A Gross; Sergei Borukhov
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-24       Impact factor: 11.205

Review 8.  Recent advances and versatility of MAGE towards industrial applications.

Authors:  Vijai Singh; Darren Braddick
Journal:  Syst Synth Biol       Date:  2015-11-07

9.  An unbiased proteomics approach to identify human cytomegalovirus RNA-associated proteins.

Authors:  Erik M Lenarcic; Benjamin J Ziehr; Nathaniel J Moorman
Journal:  Virology       Date:  2015-03-09       Impact factor: 3.616

10.  Irx4 Marks a Multipotent, Ventricular-Specific Progenitor Cell.

Authors:  Daryl O Nelson; Pratik A Lalit; Mitch Biermann; Yogananda S Markandeya; Deborah L Capes; Luke Addesso; Gina Patel; Tianxiao Han; Manorama C John; Patricia A Powers; Karen M Downs; Timothy J Kamp; Gary E Lyons
Journal:  Stem Cells       Date:  2016-09-13       Impact factor: 6.277

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