Literature DB >> 19177180

Inferences and Power Analysis Concerning Two Negative Binomial Distributions with An Application to MRI Lesion Counts Data.

Inmaculada B Aban1, Gary R Cutter, Nsoki Mavinga.   

Abstract

In comparing the mean count of two independent samples, some practitioners would use the t-test or the Wilcoxon rank sum test while others may use methods based on a Poisson model. It is not uncommon to encounter count data that exhibit overdispersion where the Poisson model is no longer appropriate. This paper deals with methods for overdispersed data using the negative binomial distribution resulting from a Poisson-Gamma mixture. We investigate the small sample properties of the likelihood-based tests and compare their performances to those of the t-test and of the Wilcoxon test. We also illustrate how these procedures may be used to compute power and sample sizes to design studies with response variables that are overdispersed count data. Although methods are based on inferences about two independent samples, sample size calculations may also be applied to problems comparing more than two independent samples. It will be shown that there is gain in efficiency when using the likelihood-based methods compared to the t-test and the ilcoxon test. In studies where each observation is very costly, the ability to derive smaller sample size estimates with the appropriate tests is not only statistically, but also financially, appealing.

Year:  2008        PMID: 19177180      PMCID: PMC2631439          DOI: 10.1016/j.csda.2008.07.034

Source DB:  PubMed          Journal:  Comput Stat Data Anal        ISSN: 0167-9473            Impact factor:   1.681


  9 in total

1.  Analysis of overdispersed count data by mixtures of Poisson variables and Poisson processes.

Authors:  P Hougaard; M L Lee; G A Whitmore
Journal:  Biometrics       Date:  1997-12       Impact factor: 2.571

2.  Exploratory treatment trials in multiple sclerosis using MRI: sample size calculations for relapsing-remitting and secondary progressive subgroups using placebo controlled parallel groups.

Authors:  N Tubridy; H J Ader; F Barkhof; A J Thompson; D H Miller
Journal:  J Neurol Neurosurg Psychiatry       Date:  1998-01       Impact factor: 10.154

3.  Use of the Multiple Sclerosis Functional Composite to predict disability in relapsing MS.

Authors:  R A Rudick; G Cutter; M Baier; E Fisher; D Dougherty; B Weinstock-Guttman; M K Mass; D Miller; N A Simonian
Journal:  Neurology       Date:  2001-05-22       Impact factor: 9.910

4.  Specific power calculations for magnetic resonance imaging (MRI) in monitoring active relapsing-remitting multiple sclerosis (MS): implications for phase II therapeutic trials.

Authors:  L Truyen; F Barkhof; M Tas; M A Van Walderveen; S T Frequin; O R Hommes; J J Nauta; C H Polman; J Valk
Journal:  Mult Scler       Date:  1997-01       Impact factor: 6.312

5.  Magnetic resonance imaging in monitoring the treatment of multiple sclerosis patients: statistical power of parallel-groups and crossover designs.

Authors:  J J Nauta; A J Thompson; F Barkhof; D H Miller
Journal:  J Neurol Sci       Date:  1994-03       Impact factor: 3.181

6.  Modelling MRI enhancing lesion counts in multiple sclerosis using a negative binomial model: implications for clinical trials.

Authors:  M P Sormani; P Bruzzi; D H Miller; C Gasperini; F Barkhof; M Filippi
Journal:  J Neurol Sci       Date:  1999-02-01       Impact factor: 3.181

7.  Statistical power of MRI monitored trials in multiple sclerosis: new data and comparison with previous results.

Authors:  M P Sormani; P D Molyneux; C Gasperini; F Barkhof; T A Yousry; D H Miller; M Filippi
Journal:  J Neurol Neurosurg Psychiatry       Date:  1999-04       Impact factor: 10.154

8.  Clinical trials of multiple sclerosis monitored with enhanced MRI: new sample size calculations based on large data sets.

Authors:  M P Sormani; D H Miller; G Comi; F Barkhof; M Rovaris; P Bruzzi; M Filippi
Journal:  J Neurol Neurosurg Psychiatry       Date:  2001-04       Impact factor: 10.154

9.  Modelling new enhancing MRI lesion counts in multiple sclerosis.

Authors:  M P Sorman; P Bruzzi; M Rovaris; F Barkhof; G Comi; D H Miller; G R Cutter; M Filipp
Journal:  Mult Scler       Date:  2001-10       Impact factor: 6.312

  9 in total
  14 in total

1.  MRI-based prediction of conversion from clinically isolated syndrome to clinically definite multiple sclerosis using SVM and lesion geometry.

Authors:  Kerstin Bendfeldt; Bernd Taschler; Laura Gaetano; Philip Madoerin; Pascal Kuster; Nicole Mueller-Lenke; Michael Amann; Hugo Vrenken; Viktor Wottschel; Frederik Barkhof; Stefan Borgwardt; Stefan Klöppel; Eva-Maria Wicklein; Ludwig Kappos; Gilles Edan; Mark S Freedman; Xavier Montalbán; Hans-Peter Hartung; Christoph Pohl; Rupert Sandbrink; Till Sprenger; Ernst-Wilhelm Radue; Jens Wuerfel; Thomas E Nichols
Journal:  Brain Imaging Behav       Date:  2019-10       Impact factor: 3.978

2.  Mutation hot spots in yeast caused by long-range clustering of homopolymeric sequences.

Authors:  Xin Ma; Maria V Rogacheva; K T Nishant; Sarah Zanders; Carlos D Bustamante; Eric Alani
Journal:  Cell Rep       Date:  2012-01-26       Impact factor: 9.423

3.  Modeling lesion counts in multiple sclerosis when patients have been selected for baseline activity.

Authors:  C J Morgan; I B Aban; C R Katholi; G R Cutter
Journal:  Mult Scler       Date:  2010-06-18       Impact factor: 6.312

4.  Bacteriophages of the Urinary Microbiome.

Authors:  Taylor Miller-Ensminger; Andrea Garretto; Jonathon Brenner; Krystal Thomas-White; Adriano Zambom; Alan J Wolfe; Catherine Putonti
Journal:  J Bacteriol       Date:  2018-03-12       Impact factor: 3.490

5.  Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster.

Authors:  Yanzhu Lin; Kseniya Golovnina; Zhen-Xia Chen; Hang Noh Lee; Yazmin L Serrano Negron; Hina Sultana; Brian Oliver; Susan T Harbison
Journal:  BMC Genomics       Date:  2016-01-05       Impact factor: 3.969

Review 6.  Statistical Considerations of Food Allergy Prevention Studies.

Authors:  Henry T Bahnson; George du Toit; Gideon Lack
Journal:  J Allergy Clin Immunol Pract       Date:  2017 Mar - Apr

7.  The role of alcohol expectancies in drinking behavior among women with alcohol use disorder and comorbid posttraumatic stress disorder.

Authors:  Eric R Pedersen; Ursula S Myers; Kendall C Browne; Sonya B Norman
Journal:  J Psychoactive Drugs       Date:  2014 Jul-Aug

Review 8.  Review: analysis of parasite and other skewed counts.

Authors:  Neal Alexander
Journal:  Trop Med Int Health       Date:  2012-06       Impact factor: 2.622

9.  Sample size calculations for skewed distributions.

Authors:  Bonnie Cundill; Neal D E Alexander
Journal:  BMC Med Res Methodol       Date:  2015-04-02       Impact factor: 4.615

10.  Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.

Authors:  Franck Rapaport; Raya Khanin; Yupu Liang; Mono Pirun; Azra Krek; Paul Zumbo; Christopher E Mason; Nicholas D Socci; Doron Betel
Journal:  Genome Biol       Date:  2013       Impact factor: 13.583

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