Literature DB >> 19173596

Relationship between hydrophobic interactions and secondary structure stability for Trpzip beta-hairpin peptides.

Takahiro Takekiyo1, Ling Wu, Yukihiro Yoshimura, Akio Shimizu, Timothy A Keiderling.   

Abstract

The temperature-induced beta-hairpin stabilities of selected mutations of the Trpzip1 peptide, SWTWEGNKWTWK (WWWW), have been investigated by electronic circular dichroism (CD), Raman, and FT-IR spectroscopies. The tryptophan (Trp) residues in the original Trpzip1 sequence were systematically substituted with tyrosine (Tyr) in different positions to test the impact of Trp interactions on the beta-hairpin structure and stability. The CD intensity at approximately 228 nm, which arises from Trp-Trp interactions (tertiary structure), and the amide I' IR absorbance at approximately 1635 cm(-1) (secondary structure) have been measured over a range of temperatures to investigate the impact of Tyr substitution on beta-hairpin thermal stability in Trpzip peptides. Mutation from Trp to Tyr in the Trpzip1 sequence reduces the extent of beta-hairpin structure and monotonically decreases the beta-hairpin stability of Trpzip1 mutant peptides with an increasing number of Tyr substitutions. Substituted Trpzip peptides with just one pair of Trp-Trp interactions close to either the terminal residues (WYYW) or the turn (YWWY) have similar stabilities. Comparison of conformational transitions monitored by CD and IR reveals them to have multistate behavior in which the temperature-induced disruption of the Trp-Trp interaction (tertiary structure) occurs at a lower temperature than the unfolding of the secondary structure.

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Year:  2009        PMID: 19173596     DOI: 10.1021/bi8019838

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

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Authors:  Kamlesh Madhusudan Makwana; Radhakrishnan Mahalakshmi
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

2.  The CLN025 decapeptide retains a β-hairpin conformation in urea and guanidinium chloride.

Authors:  Marcus P D Hatfield; Richard F Murphy; Sándor Lovas
Journal:  J Phys Chem B       Date:  2011-04-11       Impact factor: 2.991

3.  Molecular dynamics analysis of the conformations of a beta-hairpin miniprotein.

Authors:  Marcus P D Hatfield; Richard F Murphy; Sándor Lovas
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

4.  Infrared study of the stability and folding kinetics of a series of β-hairpin peptides with a common NPDG turn.

Authors:  Yao Xu; Deguo Du; Rolando Oyola
Journal:  J Phys Chem B       Date:  2011-12-02       Impact factor: 2.991

5.  UV resonance Raman study of TrpZip2 and related peptides: π-π interactions of tryptophan.

Authors:  Diana E Schlamadinger; Brian S Leigh; Judy E Kim
Journal:  J Raman Spectrosc       Date:  2012-10       Impact factor: 3.133

6.  Aryl-aryl interactions in designed peptide folds: Spectroscopic characteristics and optimal placement for structure stabilization.

Authors:  Jordan M Anderson; Brandon L Kier; Brice Jurban; Aimee Byrne; Irene Shu; Lisa A Eidenschink; Alexander A Shcherbakov; Mike Hudson; R M Fesinmeyer; Niels H Andersen
Journal:  Biopolymers       Date:  2016-06       Impact factor: 2.505

7.  Double tryptophan exciton probe to gauge proximal side chains in proteins: augmentation at low temperature.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  J Phys Chem B       Date:  2015-03-02       Impact factor: 2.991

8.  Using thioamides to site-specifically interrogate the dynamics of hydrogen bond formation in β-sheet folding.

Authors:  Robert M Culik; Hyunil Jo; William F DeGrado; Feng Gai
Journal:  J Am Chem Soc       Date:  2012-05-02       Impact factor: 15.419

9.  VCD spectroscopic properties of the beta-hairpin forming miniprotein CLN025 in various solvents.

Authors:  Marcus P D Hatfield; Richard F Murphy; Sándor Lovas
Journal:  Biopolymers       Date:  2010-05       Impact factor: 2.505

Review 10.  beta-hairpin-forming peptides; models of early stages of protein folding.

Authors:  Agnieszka Lewandowska; Stanisław Ołdziej; Adam Liwo; Harold A Scheraga
Journal:  Biophys Chem       Date:  2010-05-06       Impact factor: 2.352

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