Literature DB >> 19167428

Unbiased estimation of precise temporal correlations between spike trains.

Eran Stark1, Moshe Abeles.   

Abstract

A key issue in systems neuroscience is the contribution of precise temporal inter-neuronal interactions to information processing in the brain, and the main analytical tool used for studying pair-wise interactions is the cross-correlation histogram (CCH). Although simple to generate, a CCH is influenced by multiple factors in addition to precise temporal correlations between two spike trains, thus complicating its interpretation. A Monte-Carlo-based technique, the jittering method, has been suggested to isolate the contribution of precise temporal interactions to neural information processing. Here, we show that jittering spike trains is equivalent to convolving the CCH derived from the original trains with a finite window and using a Poisson distribution to estimate probabilities. Both procedures over-fit the original spike trains and therefore the resulting statistical tests are biased and have low power. We devise an alternative method, based on convolving the CCH with a partially hollowed window, and illustrate its utility using artificial and real spike trains. The modified convolution method is unbiased, has high power, and is computationally fast. We recommend caution in the use of the jittering method and in the interpretation of results based on it, and suggest using the modified convolution method for detecting precise temporal correlations between spike trains.

Entities:  

Mesh:

Year:  2009        PMID: 19167428     DOI: 10.1016/j.jneumeth.2008.12.029

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  28 in total

Review 1.  Conditional modeling and the jitter method of spike resampling.

Authors:  Asohan Amarasingham; Matthew T Harrison; Nicholas G Hatsopoulos; Stuart Geman
Journal:  J Neurophysiol       Date:  2011-10-26       Impact factor: 2.714

2.  Millisecond timescale synchrony among hippocampal neurons.

Authors:  Kamran Diba; Asohan Amarasingham; Kenji Mizuseki; György Buzsáki
Journal:  J Neurosci       Date:  2014-11-05       Impact factor: 6.167

3.  Cell diversity and network dynamics in photosensitive human brain organoids.

Authors:  Giorgia Quadrato; Tuan Nguyen; Evan Z Macosko; John L Sherwood; Sung Min Yang; Daniel R Berger; Natalie Maria; Jorg Scholvin; Melissa Goldman; Justin P Kinney; Edward S Boyden; Jeff W Lichtman; Ziv M Williams; Steven A McCarroll; Paola Arlotta
Journal:  Nature       Date:  2017-04-26       Impact factor: 49.962

4.  Large-scale analysis reveals populational contributions of cortical spike rate and synchrony to behavioural functions.

Authors:  Rie Kimura; Akiko Saiki; Yoko Fujiwara-Tsukamoto; Yutaka Sakai; Yoshikazu Isomura
Journal:  J Physiol       Date:  2016-11-07       Impact factor: 5.182

5.  Attenuated Activity across Multiple Cell Types and Reduced Monosynaptic Connectivity in the Aged Perirhinal Cortex.

Authors:  Andrew P Maurer; Sara N Burke; Kamran Diba; Carol A Barnes
Journal:  J Neurosci       Date:  2017-08-11       Impact factor: 6.167

6.  Physiological Properties and Behavioral Correlates of Hippocampal Granule Cells and Mossy Cells.

Authors:  Yuta Senzai; György Buzsáki
Journal:  Neuron       Date:  2017-01-26       Impact factor: 17.173

7.  Monolithically Integrated μLEDs on Silicon Neural Probes for High-Resolution Optogenetic Studies in Behaving Animals.

Authors:  Fan Wu; Eran Stark; Pei-Cheng Ku; Kensall D Wise; György Buzsáki; Euisik Yoon
Journal:  Neuron       Date:  2015-11-29       Impact factor: 17.173

8.  Inhibition-induced theta resonance in cortical circuits.

Authors:  Eran Stark; Ronny Eichler; Lisa Roux; Shigeyoshi Fujisawa; Horacio G Rotstein; György Buzsáki
Journal:  Neuron       Date:  2013-12-04       Impact factor: 17.173

9.  Imagined gait modulates neuronal network dynamics in the human pedunculopontine nucleus.

Authors:  Timothy L Tattersall; Peter G Stratton; Terry J Coyne; Raymond Cook; Paul Silberstein; Peter A Silburn; François Windels; Pankaj Sah
Journal:  Nat Neurosci       Date:  2014-02-02       Impact factor: 24.884

10.  Surrogate spike train generation through dithering in operational time.

Authors:  Sebastien Louis; George L Gerstein; Sonja Grün; Markus Diesmann
Journal:  Front Comput Neurosci       Date:  2010-09-22       Impact factor: 2.380

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