Literature DB >> 19164753

The peopling of the Pacific from a bacterial perspective.

Yoshan Moodley1, Bodo Linz, Yoshio Yamaoka, Helen M Windsor, Sebastien Breurec, Jeng-Yih Wu, Ayas Maady, Steffie Bernhöft, Jean-Michel Thiberge, Suparat Phuanukoonnon, Gangolf Jobb, Peter Siba, David Y Graham, Barry J Marshall, Mark Achtman.   

Abstract

Two prehistoric migrations peopled the Pacific. One reached New Guinea and Australia, and a second, more recent, migration extended through Melanesia and from there to the Polynesian islands. These migrations were accompanied by two distinct populations of the specific human pathogen Helicobacter pylori, called hpSahul and hspMaori, respectively. hpSahul split from Asian populations of H. pylori 31,000 to 37,000 years ago, in concordance with archaeological history. The hpSahul populations in New Guinea and Australia have diverged sufficiently to indicate that they have remained isolated for the past 23,000 to 32,000 years. The second human expansion from Taiwan 5000 years ago dispersed one of several subgroups of the Austronesian language family along with one of several hspMaori clades into Melanesia and Polynesia, where both language and parasite have continued to diverge.

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Year:  2009        PMID: 19164753      PMCID: PMC2827536          DOI: 10.1126/science.1166083

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   63.714


  17 in total

1.  Language trees support the express-train sequence of Austronesian expansion.

Authors:  R D Gray; F M Jordan
Journal:  Nature       Date:  2000-06-29       Impact factor: 49.962

2.  Traces of human migrations in Helicobacter pylori populations.

Authors:  Daniel Falush; Thierry Wirth; Bodo Linz; Jonathan K Pritchard; Matthew Stephens; Mark Kidd; Martin J Blaser; David Y Graham; Sylvie Vacher; Guillermo I Perez-Perez; Yoshio Yamaoka; Francis Mégraud; Kristina Otto; Ulrike Reichard; Elena Katzowitsch; Xiaoyan Wang; Mark Achtman; Sebastian Suerbaum
Journal:  Science       Date:  2003-03-07       Impact factor: 47.728

3.  Single, rapid coastal settlement of Asia revealed by analysis of complete mitochondrial genomes.

Authors:  Vincent Macaulay; Catherine Hill; Alessandro Achilli; Chiara Rengo; Douglas Clarke; William Meehan; James Blackburn; Ornella Semino; Rosaria Scozzari; Fulvio Cruciani; Adi Taha; Norazila Kassim Shaari; Joseph Maripa Raja; Patimah Ismail; Zafarina Zainuddin; William Goodwin; David Bulbeck; Hans-Jürgen Bandelt; Stephen Oppenheimer; Antonio Torroni; Martin Richards
Journal:  Science       Date:  2005-05-13       Impact factor: 47.728

4.  East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage.

Authors:  Chandrabali Ghose; Guillermo I Perez-Perez; Maria-Gloria Dominguez-Bello; David T Pride; Claudio M Bravi; Martin J Blaser
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-04       Impact factor: 11.205

5.  Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age.

Authors:  D Falush; C Kraft; N S Taylor; P Correa; J G Fox; M Achtman; S Suerbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

6.  The origins of the Polynesians: an interpretation from mitochondrial lineage analysis.

Authors:  B Sykes; A Leiboff; J Low-Beer; S Tetzner; M Richards
Journal:  Am J Hum Genet       Date:  1995-12       Impact factor: 11.025

7.  Polynesian genetic affinities with Southeast Asian populations as identified by mtDNA analysis.

Authors:  T Melton; R Peterson; A J Redd; N Saha; A S Sofro; J Martinson; M Stoneking
Journal:  Am J Hum Genet       Date:  1995-08       Impact factor: 11.025

8.  A geographically explicit genetic model of worldwide human-settlement history.

Authors:  Hua Liu; Franck Prugnolle; Andrea Manica; François Balloux
Journal:  Am J Hum Genet       Date:  2006-05-30       Impact factor: 11.025

9.  Traces of archaic mitochondrial lineages persist in Austronesian-speaking Formosan populations.

Authors:  Jean A Trejaut; Toomas Kivisild; Jun Hun Loo; Chien Liang Lee; Chun Lin He; Chia Jung Hsu; Zheng Yan Lee; Zheng Yuan Li; Marie Lin
Journal:  PLoS Biol       Date:  2005-07-05       Impact factor: 8.029

10.  An African origin for the intimate association between humans and Helicobacter pylori.

Authors:  Bodo Linz; François Balloux; Yoshan Moodley; Andrea Manica; Hua Liu; Philippe Roumagnac; Daniel Falush; Christiana Stamer; Franck Prugnolle; Schalk W van der Merwe; Yoshio Yamaoka; David Y Graham; Emilio Perez-Trallero; Torkel Wadstrom; Sebastian Suerbaum; Mark Achtman
Journal:  Nature       Date:  2007-02-07       Impact factor: 49.962

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  137 in total

Review 1.  Impact of recombination on bacterial evolution.

Authors:  Xavier Didelot; Martin C J Maiden
Journal:  Trends Microbiol       Date:  2010-05-06       Impact factor: 17.079

2.  Human phylogeography and diversity.

Authors:  Alexander H Harcourt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

Review 3.  Insights from genomic comparisons of genetically monomorphic bacterial pathogens.

Authors:  Mark Achtman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-19       Impact factor: 6.237

Review 4.  Echoes of a distant past: The cag pathogenicity island of Helicobacter pylori.

Authors:  Nicola Pacchiani; Stefano Censini; Ludovico Buti; Antonello Covacci
Journal:  Cold Spring Harb Perspect Med       Date:  2013-11-01       Impact factor: 6.915

5.  The core genome m5C methyltransferase JHP1050 (M.Hpy99III) plays an important role in orchestrating gene expression in Helicobacter pylori.

Authors:  Iratxe Estibariz; Annemarie Overmann; Florent Ailloud; Juliane Krebes; Christine Josenhans; Sebastian Suerbaum
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

6.  How robust are "isolation with migration" analyses to violations of the im model? A simulation study.

Authors:  Jared L Strasburg; Loren H Rieseberg
Journal:  Mol Biol Evol       Date:  2009-09-30       Impact factor: 16.240

7.  Ecological consequences of human niche construction: Examining long-term anthropogenic shaping of global species distributions.

Authors:  Nicole L Boivin; Melinda A Zeder; Dorian Q Fuller; Alison Crowther; Greger Larson; Jon M Erlandson; Tim Denham; Michael D Petraglia
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-07       Impact factor: 11.205

8.  The mutation spectrum of the phenylalanine hydroxylase (PAH) gene and associated haplotypes reveal ethnic heterogeneity in the Taiwanese population.

Authors:  Ying Liang; Miao-Zeng Huang; Cheng-Yi Cheng; Hung-Kun Chao; Victor Tramjay Fwu; Szu-Hui Chiang; Kwang-Jen Hsiao; Dau-Ming Niu; Tsung-Sheng Su
Journal:  J Hum Genet       Date:  2014-01-09       Impact factor: 3.172

Review 9.  Unravelling the effects of the environment and host genotype on the gut microbiome.

Authors:  Aymé Spor; Omry Koren; Ruth Ley
Journal:  Nat Rev Microbiol       Date:  2011-04       Impact factor: 60.633

Review 10.  Polymorphism in the Helicobacter pylori CagA and VacA toxins and disease.

Authors:  Dacie R Bridge; D Scott Merrell
Journal:  Gut Microbes       Date:  2013-02-04
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