Literature DB >> 19158818

DNA variations in human and medical genetics: 25 years of my experience.

Yusuke Nakamura1.   

Abstract

DNA variations have contributed enormously to the fields of medical and forensic science, especially through their use in studies on genes responsible or susceptible to various diseases and those on screening of chromosomal abnormalities in tumors. The types of genetic variations used in these studies have changed in the past 25 years and can be classified into five major classes: RFLP (restriction fragment length polymorphism), VNTR (variable number of tandem repeat), STR (short tandem repeat or microsatellite), SNP (single-nucleotide polymorphism) and CNV (copy-number variation). Genetic linkage analysis using these tools helped to map and discover genes responsible for hundreds of hereditary diseases. Furthermore, construction of the international SNP database and recent development of high-throughput SNP typing platforms enabled us to perform genome-wide association studies, which have identified genes (or genetic variations) susceptible to common diseases or those associated with drug responses. Genome-wide sequencing of individual DNAs is gaining immense scope. Here, I summarize the history of polymorphic DNA markers and their contribution to the genetic analysis of both rare hereditary diseases and common diseases, as well as recent advances in pharmacogenetics, including our contribution to these areas.

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Year:  2009        PMID: 19158818     DOI: 10.1038/jhg.2008.6

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  20 in total

Review 1.  Regions of homozygosity and their impact on complex diseases and traits.

Authors:  Chee Seng Ku; Nasheen Naidoo; Shu Mei Teo; Yudi Pawitan
Journal:  Hum Genet       Date:  2010-11-23       Impact factor: 4.132

Review 2.  GWAS in autoimmune thyroid disease: redefining our understanding of pathogenesis.

Authors:  Matthew J Simmonds
Journal:  Nat Rev Endocrinol       Date:  2013-03-26       Impact factor: 43.330

3.  Association of vitamin D receptor gene polymorphism and calcium urolithiasis in the Chinese Han population.

Authors:  Shuai Wang; Xiao Wang; Jian Wu; Yiwei Lin; Hong Chen; Xiangyi Zheng; Cheng Zhou; Liping Xie
Journal:  Urol Res       Date:  2011-11-25

Review 4.  Gastric cancer and gene copy number variation: emerging cancer drivers for targeted therapy.

Authors:  L Liang; J-Y Fang; J Xu
Journal:  Oncogene       Date:  2015-06-15       Impact factor: 9.867

5.  Inherited variants in the chemokine CCL2 gene and prostate cancer aggressiveness in a Caucasian cohort.

Authors:  Tong Sun; Lee Gwo-Shu Mary; William K Oh; Matthew L Freedman; Mark Pomerantz; Kenneth J Pienta; Philip W Kantoff
Journal:  Clin Cancer Res       Date:  2010-12-06       Impact factor: 12.531

6.  The genetic profile of bone repair.

Authors:  Rozalia Dimitriou; Peter V Giannoudis
Journal:  Clin Cases Miner Bone Metab       Date:  2013-01

7.  Integrative analysis of prognostic long non-coding RNAs with copy number variation in bladder cancer.

Authors:  Wenwen Zhong; Dejuan Wang; Bing Yao; Xiaoxia Chen; Zhongyang Wang; Hu Qu; Bo Ma; Lei Ye; Jianguang Qiu
Journal:  J Zhejiang Univ Sci B       Date:  2021-08-15       Impact factor: 3.066

8.  Evaluation of probabilistic and logical inference for a SNP annotation system.

Authors:  Terry H Shen; Peter Tarczy-Hornoch; Landon T Detwiler; Eithon Cadag; Christopher S Carlson
Journal:  J Biomed Inform       Date:  2009-12-14       Impact factor: 6.317

9.  Genetic predisposition to fracture non-union: a case control study of a preliminary single nucleotide polymorphisms analysis of the BMP pathway.

Authors:  Rozalia Dimitriou; Ian M Carr; Robert M West; Alexander F Markham; Peter V Giannoudis
Journal:  BMC Musculoskelet Disord       Date:  2011-02-10       Impact factor: 2.362

10.  Mixed sequence reader: a program for analyzing DNA sequences with heterozygous base calling.

Authors:  Chun-Tien Chang; Chi-Neu Tsai; Chuan Yi Tang; Chun-Houh Chen; Jang-Hau Lian; Chi-Yu Hu; Chia-Lung Tsai; Angel Chao; Chyong-Huey Lai; Tzu-Hao Wang; Yun-Shien Lee
Journal:  ScientificWorldJournal       Date:  2012-06-18
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