Literature DB >> 19154179

NMR structure determination of a segmentally labeled glycoprotein using in vitro glycosylation.

Vadim Slynko1, Mario Schubert, Shin Numao, Michael Kowarik, Markus Aebi, Frédéric H-T Allain.   

Abstract

Although there is great interest in three-dimensional structures of glycoproteins and complex oligosaccharides, their structural determination have been hampered by inhomogeneous and incomplete glycosylation, poor expression, low tendency to crystallize, and severe chemical shift overlap. Using segmental labeling of the glycan and the protein component by in vitro glycosylation, we developed a novel method of NMR structural determination that overcomes some of these problems. Highly homogeneously glycosylated proteins in milligram amounts can be obtained. This allowed the determination of the structure of an N-linked glycoprotein from Campylobacter jejuni. The glycosylation acceptor site was found to be in a flexible loop. The presented methodology extends the observable NOE distance limit of oligosaccharides significantly over 4 A, resulting in a high number of distance restraints per glycosidic linkage. A well-defined glycan structure was obtained.

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Year:  2009        PMID: 19154179     DOI: 10.1021/ja808682v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  23 in total

Review 1.  Protein glycosylation in bacteria: sweeter than ever.

Authors:  Harald Nothaft; Christine M Szymanski
Journal:  Nat Rev Microbiol       Date:  2010-11       Impact factor: 60.633

Review 2.  Recent advances in segmental isotope labeling of proteins: NMR applications to large proteins and glycoproteins.

Authors:  Lenka Skrisovska; Mario Schubert; Frédéric H-T Allain
Journal:  J Biomol NMR       Date:  2009-08-19       Impact factor: 2.835

3.  Cytoplasmic N-glycosyltransferase of Actinobacillus pleuropneumoniae is an inverting enzyme and recognizes the NX(S/T) consensus sequence.

Authors:  Flavio Schwarz; Yao-Yun Fan; Mario Schubert; Markus Aebi
Journal:  J Biol Chem       Date:  2011-08-18       Impact factor: 5.157

4.  Mechanism of bacterial oligosaccharyltransferase: in vitro quantification of sequon binding and catalysis.

Authors:  Sabina Gerber; Christian Lizak; Gaëlle Michaud; Monika Bucher; Tamis Darbre; Markus Aebi; Jean-Louis Reymond; Kaspar P Locher
Journal:  J Biol Chem       Date:  2013-02-04       Impact factor: 5.157

5.  Simultaneous glycan-peptide characterization using hydrophilic interaction chromatography and parallel fragmentation by CID, higher energy collisional dissociation, and electron transfer dissociation MS applied to the N-linked glycoproteome of Campylobacter jejuni.

Authors:  Nichollas E Scott; Benjamin L Parker; Angela M Connolly; Jana Paulech; Alistair V G Edwards; Ben Crossett; Linda Falconer; Daniel Kolarich; Steven P Djordjevic; Peter Højrup; Nicolle H Packer; Martin R Larsen; Stuart J Cordwell
Journal:  Mol Cell Proteomics       Date:  2010-04-01       Impact factor: 5.911

Review 6.  Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2009-2010.

Authors:  David J Harvey
Journal:  Mass Spectrom Rev       Date:  2014-05-26       Impact factor: 10.946

Review 7.  The sweet tooth of bacteria: common themes in bacterial glycoconjugates.

Authors:  Hanne L P Tytgat; Sarah Lebeer
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

8.  Bacterial N-Glycosylation Efficiency Is Dependent on the Structural Context of Target Sequons.

Authors:  Julie Michelle Silverman; Barbara Imperiali
Journal:  J Biol Chem       Date:  2016-08-29       Impact factor: 5.157

9.  All-atom ensemble modeling to analyze small-angle x-ray scattering of glycosylated proteins.

Authors:  Miklos Guttman; Patrick Weinkam; Andrej Sali; Kelly K Lee
Journal:  Structure       Date:  2013-03-05       Impact factor: 5.006

10.  Preferred conformations of N-glycan core pentasaccharide in solution and in glycoproteins.

Authors:  Sunhwan Jo; Yifei Qi; Wonpil Im
Journal:  Glycobiology       Date:  2015-09-24       Impact factor: 4.313

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