Literature DB >> 19153451

Overexpression, purification, characterization and preliminary crystallographic study of phosphoglycolate phosphatase from Shigella flexneri 2a strain 301.

Heli Liu1, Huina Zhou, Deyu Zhu, Ruchang Bi.   

Abstract

Phosphoglycolate phosphatase has a salvage function in the metabolism of the 2-phosphoglycolate formed during bacterial DNA repair. In order to better understand its dimerization behaviour, the influence of metal ions on its activity and its catalytic mechanism at the molecular level, recombinant phosphoglycolate phosphatase from Shigella flexneri was overexpressed, purified, characterized and crystallized by the hanging-drop vapour-diffusion method at 291 K using polyethylene glycol 3500 as a precipitant and zinc acetate as an additive. The crystals belonged to space group R3, with unit-cell parameters a = 88.1, b = 88.1, c = 259.2 A, corresponding to the presence of two molecules in the asymmetric unit. SeMet-labelled protein was also prepared and crystallized for use in phase determination. Initial structure determination using the multiwavelength anomalous dispersion (MAD) method clearly revealed that SfPGPase bears an alpha-helical cap domain that differs from that of a previously reported orthologue.

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Year:  2008        PMID: 19153451      PMCID: PMC2628850          DOI: 10.1107/S1744309108039067

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

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Authors:  J D Selengut
Journal:  Biochemistry       Date:  2001-10-23       Impact factor: 3.162

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Journal:  J Biol Chem       Date:  1978-03-25       Impact factor: 5.157

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Authors:  Zhibing Lu; Debra Dunaway-Mariano; Karen N Allen
Journal:  Biochemistry       Date:  2005-06-21       Impact factor: 3.162

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Journal:  J Biol Chem       Date:  1986-08-25       Impact factor: 5.157

6.  Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum.

Authors:  Youngchang Kim; Alexander F Yakunin; Ekaterina Kuznetsova; Xiaohui Xu; Micha Pennycooke; Jun Gu; Fred Cheung; Michael Proudfoot; Cheryl H Arrowsmith; Andrzej Joachimiak; Aled M Edwards; Dinesh Christendat
Journal:  J Biol Chem       Date:  2003-10-10       Impact factor: 5.157

7.  Role of 2-phosphoglycolate phosphatase of Escherichia coli in metabolism of the 2-phosphoglycolate formed in DNA repair.

Authors:  Maria Teresa Pellicer; Maria Felisa Nuñez; Juan Aguilar; Josefa Badia; Laura Baldoma
Journal:  J Bacteriol       Date:  2003-10       Impact factor: 3.490

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Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

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Authors:  P Hardy; P Baldy
Journal:  Planta       Date:  1986-06       Impact factor: 4.116

10.  Characterization of three genes in the dam-containing operon of Escherichia coli.

Authors:  A Lyngstadaas; A Løbner-Olesen; E Boye
Journal:  Mol Gen Genet       Date:  1995-06-10
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