Literature DB >> 19151137

Differential binding profiles of StpA in wild-type and h-ns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis.

Ebru Uyar1, Ken Kurokawa, Mika Yoshimura, Shu Ishikawa, Naotake Ogasawara, Taku Oshima.   

Abstract

We performed chromatin immunoprecipitation-microarray analysis to investigate differences in function between StpA and H-NS in Escherichia coli cells. StpA binding regions essentially overlap those of H-NS in wild-type cells, while they are reduced to one-third in the hns mutant. The H-NS binding profile was unaffected by stpA inactivation.

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Year:  2009        PMID： 19151137      PMCID： PMC2655504          DOI： 10.1128/JB.01594-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  18 in total

1.  Heteromeric interactions among nucleoid-associated bacterial proteins: localization of StpA-stabilizing regions in H-NS of Escherichia coli.

Authors:  J Johansson; S Eriksson; B Sondén; S N Wai; B E Uhlin
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

2.  Nucleoid proteins stimulate stringently controlled bacterial promoters: a link between the cAMP-CRP and the (p)ppGpp regulons in Escherichia coli.

Authors:  J Johansson; C Balsalobre; S Y Wang; J Urbonaviciene; D J Jin; B Sondén; B E Uhlin
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

3.  Differential dependence of StpA on H-NS in autoregulation of stpA and in regulation of bgl.

Authors:  Tinka Wolf; Wiebke Janzen; Corinna Blum; Karin Schnetz
Journal:  J Bacteriol       Date:  2006-10       Impact factor: 3.490

4.  H-NS promotes looped domain formation in the bacterial chromosome.

Authors:  Maarten C Noom; William W Navarre; Taku Oshima; Gijs J L Wuite; Remus T Dame
Journal:  Curr Biol       Date:  2007-11-06       Impact factor: 10.834

Review 5.  New insights into transcriptional regulation by H-NS.

Authors:  Ferric C Fang; Sylvie Rimsky
Journal:  Curr Opin Microbiol       Date:  2008-04-02       Impact factor: 7.934

6.  Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity.

Authors:  T A Azam; A Ishihama
Journal:  J Biol Chem       Date:  1999-11-12       Impact factor: 5.157

7.  Role of histone-like proteins H-NS and StpA in expression of virulence determinants of uropathogenic Escherichia coli.

Authors:  Claudia M Müller; Ulrich Dobrindt; Gábor Nagy; Levente Emödy; Bernt Eric Uhlin; Jörg Hacker
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

8.  Differential protease-mediated turnover of H-NS and StpA revealed by a mutation altering protein stability and stationary-phase survival of Escherichia coli.

Authors:  J Johansson; B E Uhlin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

9.  Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.

Authors:  David C Grainger; Douglas Hurd; Martin D Goldberg; Stephen J W Busby
Journal:  Nucleic Acids Res       Date:  2006-09-08       Impact factor: 16.971

10.  H-NS mediates the silencing of laterally acquired genes in bacteria.

Authors:  Sacha Lucchini; Gary Rowley; Martin D Goldberg; Douglas Hurd; Marcus Harrison; Jay C D Hinton
Journal:  PLoS Pathog       Date:  2006-08       Impact factor: 6.823
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  22 in total

1.  Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cells.

Authors:  Yoko Kusuya; Ken Kurokawa; Shu Ishikawa; Naotake Ogasawara; Taku Oshima
Journal:  J Bacteriol       Date:  2011-04-22       Impact factor: 3.490

2.  Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins.

Authors:  Shivalika Saxena; J Gowrishankar
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

3.  Gene expression homeostasis and chromosome architecture.

Authors:  Aswin Sai Narain Seshasayee
Journal:  Bioarchitecture       Date:  2015-05-21

4.  Function of the Histone-Like Protein H-NS in Motility of Escherichia coli: Multiple Regulatory Roles Rather than Direct Action at the Flagellar Motor.

Authors:  Eun A Kim; David F Blair
Journal:  J Bacteriol       Date:  2015-07-20       Impact factor: 3.490

5.  The transcription regulator and c-di-GMP phosphodiesterase PdeL represses motility in Escherichia coli.

Authors:  Cihan Yilmaz; Aathmaja Anandhi Rangarajan; Karin Schnetz
Journal:  J Bacteriol       Date:  2020-12-14       Impact factor: 3.490

6.  Histone-like Nucleoid-Structuring Protein (H-NS) Paralogue StpA Activates the Type I-E CRISPR-Cas System against Natural Transformation in Escherichia coli.

Authors:  Dongchang Sun; Xudan Mao; Mingyue Fei; Ziyan Chen; Tingheng Zhu; Juanping Qiu
Journal:  Appl Environ Microbiol       Date:  2020-07-02       Impact factor: 4.792

7.  Characterization of the YdeO regulon in Escherichia coli.

Authors:  Yuki Yamanaka; Taku Oshima; Akira Ishihama; Kaneyoshi Yamamoto
Journal:  PLoS One       Date:  2014-11-06       Impact factor: 3.240

8.  High-Resolution Mapping of the Escherichia coli Chromosome Reveals Positions of High and Low Transcription.

Authors:  Scott A Scholz; Rucheng Diao; Michael B Wolfe; Elayne M Fivenson; Xiaoxia Nina Lin; Peter L Freddolino
Journal:  Cell Syst       Date:  2019-03-20       Impact factor: 10.304

9.  Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coli.

Authors:  Jessica M Moore; David Magnan; Ana K Mojica; María Angélica Bravo Núñez; David Bates; Susan M Rosenberg; P J Hastings
Journal:  Genetics       Date:  2015-10-23       Impact factor: 4.562

10.  Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS.

Authors:  Rosa C Baños; Aitziber Vivero; Sonia Aznar; Jesús García; Miquel Pons; Cristina Madrid; Antonio Juárez
Journal:  PLoS Genet       Date:  2009-06-12       Impact factor: 5.917
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