Literature DB >> 19143826

Hierarchical models facilitate spatial analysis of large data sets: a case study on invasive plant species in the northeastern United States.

A M Latimer1, S Banerjee, H Sang, E S Mosher, J A Silander.   

Abstract

Many critical ecological issues require the analysis of large spatial point data sets - for example, modelling species distributions, abundance and spread from survey data. But modelling spatial relationships, especially in large point data sets, presents major computational challenges. We use a novel Bayesian hierarchical statistical approach, 'spatial predictive process' modelling, to predict the distribution of a major invasive plant species, Celastrus orbiculatus, in the northeastern USA. The model runs orders of magnitude faster than traditional geostatistical models on a large data set of c. 4000 points, and performs better than generalized linear models, generalized additive models and geographically weighted regression in cross-validation. We also use this approach to model simultaneously the distributions of a set of four major invasive species in a spatially explicit multivariate model. This multispecies analysis demonstrates that some pairs of species exhibit negative residual spatial covariation, suggesting potential competitive interaction or divergent responses to unmeasured factors.

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Year:  2009        PMID: 19143826     DOI: 10.1111/j.1461-0248.2008.01270.x

Source DB:  PubMed          Journal:  Ecol Lett        ISSN: 1461-023X            Impact factor:   9.492


  12 in total

1.  Quantifying spatio-temporal variation of invasion spread.

Authors:  Joshua Goldstein; Jaewoo Park; Murali Haran; Andrew Liebhold; Ottar N Bjørnstad
Journal:  Proc Biol Sci       Date:  2019-01-16       Impact factor: 5.349

2.  Bayesian Modeling for Large Spatial Datasets.

Authors:  Sudipto Banerjee; Montserrat Fuentes
Journal:  Wiley Interdiscip Rev Comput Stat       Date:  2012-01

3.  Applying spatiotemporal models to monitoring data to quantify fish population responses to the Deepwater Horizon oil spill in the Gulf of Mexico.

Authors:  Eric J Ward; Kiva L Oken; Kenneth A Rose; Shaye Sable; Katherine Watkins; Elizabeth E Holmes; Mark D Scheuerell
Journal:  Environ Monit Assess       Date:  2018-08-18       Impact factor: 2.513

4.  Climate change both facilitates and inhibits invasive plant ranges in New England.

Authors:  Cory Merow; Sarah Treanor Bois; Jenica M Allen; Yingying Xie; John A Silander
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-27       Impact factor: 11.205

Review 5.  A checklist for maximizing reproducibility of ecological niche models.

Authors:  Xiao Feng; Daniel S Park; Cassondra Walker; A Townsend Peterson; Cory Merow; Monica Papeş
Journal:  Nat Ecol Evol       Date:  2019-09-23       Impact factor: 15.460

Review 6.  The role of biotic interactions in shaping distributions and realised assemblages of species: implications for species distribution modelling.

Authors:  Mary Susanne Wisz; Julien Pottier; W Daniel Kissling; Loïc Pellissier; Jonathan Lenoir; Christian F Damgaard; Carsten F Dormann; Mads C Forchhammer; John-Arvid Grytnes; Antoine Guisan; Risto K Heikkinen; Toke T Høye; Ingolf Kühn; Miska Luoto; Luigi Maiorano; Marie-Charlotte Nilsson; Signe Normand; Erik Öckinger; Niels M Schmidt; Mette Termansen; Allan Timmermann; David A Wardle; Peter Aastrup; Jens-Christian Svenning
Journal:  Biol Rev Camb Philos Soc       Date:  2012-06-12

7.  Enhanced effects of biotic interactions on predicting multispecies spatial distribution of submerged macrophytes after eutrophication.

Authors:  Kun Song; Yichong Cui; Xijin Zhang; Yingji Pan; Junli Xu; Kaiqin Xu; Liangjun Da
Journal:  Ecol Evol       Date:  2017-08-22       Impact factor: 2.912

8.  Empirically-based modeling and mapping to consider the co-occurrence of ecological receptors and stressors.

Authors:  Roy W Martin; Eric R Waits; Christopher T Nietch
Journal:  Sci Total Environ       Date:  2017-09-24       Impact factor: 7.963

9.  Integrating experimental and distribution data to predict future species patterns.

Authors:  Jonne Kotta; Jarno Vanhatalo; Holger Jänes; Helen Orav-Kotta; Luca Rugiu; Veijo Jormalainen; Ivo Bobsien; Markku Viitasalo; Elina Virtanen; Antonia Nyström Sandman; Martin Isaeus; Sonja Leidenberger; Per R Jonsson; Kerstin Johannesson
Journal:  Sci Rep       Date:  2019-02-12       Impact factor: 4.379

10.  Computationally efficient joint species distribution modeling of big spatial data.

Authors:  Gleb Tikhonov; Li Duan; Nerea Abrego; Graeme Newell; Matt White; David Dunson; Otso Ovaskainen
Journal:  Ecology       Date:  2019-12-20       Impact factor: 5.499

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