Literature DB >> 19133773

A role of the heme-7-propionate side chain in cytochrome P450cam as a gate for regulating the access of water molecules to the substrate-binding site.

Takashi Hayashi1, Katsuyoshi Harada, Keisuke Sakurai, Hideo Shimada, Shun Hirota.   

Abstract

Cytochrome P450cam is a heme-containing enzyme which catalyzes hydroxylation of d-camphor. The heme is bound in the heme pocket via noncovalent interactions, where two heme-propionate side chains interact with Arg, His, and/or Asp residues. To understand the role of the heme-7-propionate side chain, we prepared reconstituted P450cam with an artificial one-legged heme which has a methyl group at the position of the 7-propionate. Removal of 7-propionate dramatically decreases the d-camphor affinity by 3 orders of magnitude relative to that of the wild-type enzyme, and spectroscopic data indicate that 74% of the ferric P450cam exhibits a low-spin state owing to water molecule occupancy in the substrate-binding site under the normal assay conditions. Thus, the monooxygenase activity of the reconstituted protein is remarkably low due to the decrease in the rate of the first electron transfer from reduced putidaredoxin, whereas 87% of oxidized NADH was utilized to produce 5-hydroxy-d-camphor without any significant uncoupling reactions. X-ray structural analysis of the reconstituted enzyme reveals a novel water array extending from the substrate-binding site to bulk solvent through the position occupied by 7-propionate. This water array appears without causing any major changes in the protein structure with the notable exception of conformational changes occurring at Asp297 and Gln322 residues. We propose that the 7-propionate forms a barrier against entry of bulk water molecules and therefore in combination with Asp297, Arg299, and Gln322 plays an essential role in the process of elimination of the substrate-binding site water cluster which occurs upon d-camphor binding.

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Year:  2009        PMID: 19133773     DOI: 10.1021/ja807420k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Tyrosine B10 triggers a heme propionate hydrogen bonding network loop with glutamine E7 moiety.

Authors:  Brenda J Ramos-Santana; Juan López-Garriga
Journal:  Biochem Biophys Res Commun       Date:  2012-07-15       Impact factor: 3.575

Review 2.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

3.  Structural differences between soluble and membrane bound cytochrome P450s.

Authors:  I G Denisov; A Y Shih; S G Sligar
Journal:  J Inorg Biochem       Date:  2011-12-14       Impact factor: 4.155

Review 4.  A role of heme side-chains of human hemoglobin in its function revealed by circular dichroism and resonance Raman spectroscopy.

Authors:  Masako Nagai; Naoki Mizusawa; Teizo Kitagawa; Shigenori Nagatomo
Journal:  Biophys Rev       Date:  2017-12-19

Review 5.  Updating the Paradigm: Redox Partner Binding and Conformational Dynamics in Cytochromes P450.

Authors:  Thomas L Poulos; Alec H Follmer
Journal:  Acc Chem Res       Date:  2021-12-29       Impact factor: 22.384

6.  Regulation of nitrite reductase and lipid binding properties of cytoglobin by surface and distal histidine mutations.

Authors:  Stefan J Kaliszuk; Natasha I Morgan; Taylor N Ayers; Courtney E Sparacino-Watkins; Anthony W DeMartino; Kaitlin Bocian; Venkata Ragireddy; Qin Tong; Jesús Tejero
Journal:  Nitric Oxide       Date:  2022-06-03       Impact factor: 4.898

7.  How does the reductase help to regulate the catalytic cycle of cytochrome P450 3A4 using the conserved water channel?

Authors:  Dan Fishelovitch; Sason Shaik; Haim J Wolfson; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2010-05-06       Impact factor: 2.991

8.  Synthesis and catalytic properties of a series of cobalt porphyrins as cytochrome P450 model: the effect of substituents on the catalytic activity.

Authors:  Bingcheng Hu; Chengguo Sun; Quanzhi Deng; Zuliang Liu
Journal:  J Incl Phenom Macrocycl Chem       Date:  2012-07-05       Impact factor: 1.633

9.  Ligand and Redox Partner Binding Generates a New Conformational State in Cytochrome P450cam (CYP101A1).

Authors:  Alec H Follmer; Sarvind Tripathi; Thomas L Poulos
Journal:  J Am Chem Soc       Date:  2019-01-31       Impact factor: 15.419

10.  Active site diversification of P450cam with indole generates catalysts for benzylic oxidation reactions.

Authors:  Paul P Kelly; Anja Eichler; Susanne Herter; David C Kranz; Nicholas J Turner; Sabine L Flitsch
Journal:  Beilstein J Org Chem       Date:  2015-09-22       Impact factor: 2.883

  10 in total

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