Literature DB >> 19133223

A global benchmark study using affinity-based biosensors.

Rebecca L Rich1, Giuseppe A Papalia, Peter J Flynn, Jamie Furneisen, John Quinn, Joshua S Klein, Phini S Katsamba, M Brent Waddell, Michael Scott, Joshua Thompson, Judie Berlier, Schuyler Corry, Mireille Baltzinger, Gabrielle Zeder-Lutz, Andreas Schoenemann, Anca Clabbers, Sebastien Wieckowski, Mary M Murphy, Phillip Page, Thomas E Ryan, Jay Duffner, Tanmoy Ganguly, John Corbin, Satyen Gautam, Gregor Anderluh, Andrej Bavdek, Dana Reichmann, Satya P Yadav, Eric Hommema, Ewa Pol, Andrew Drake, Scott Klakamp, Trevor Chapman, Dawn Kernaghan, Ken Miller, Jason Schuman, Kevin Lindquist, Kara Herlihy, Michael B Murphy, Richard Bohnsack, Bruce Andrien, Pietro Brandani, Danny Terwey, Rohn Millican, Ryan J Darling, Liann Wang, Quincy Carter, Joe Dotzlaf, Jacinto Lopez-Sagaseta, Islay Campbell, Paola Torreri, Sylviane Hoos, Patrick England, Yang Liu, Yasmina Abdiche, Daniel Malashock, Alanna Pinkerton, Melanie Wong, Eileen Lafer, Cynthia Hinck, Kevin Thompson, Carmelo Di Primo, Alison Joyce, Jonathan Brooks, Federico Torta, Anne Birgitte Bagge Hagel, Janus Krarup, Jesper Pass, Monica Ferreira, Sergei Shikov, Malgorzata Mikolajczyk, Yuki Abe, Gaetano Barbato, Anthony M Giannetti, Ganeshram Krishnamoorthy, Bianca Beusink, Daulet Satpaev, Tiffany Tsang, Eric Fang, James Partridge, Stephen Brohawn, James Horn, Otto Pritsch, Gonzalo Obal, Sanjay Nilapwar, Ben Busby, Gerardo Gutierrez-Sanchez, Ruchira Das Gupta, Sylvie Canepa, Krista Witte, Zaneta Nikolovska-Coleska, Yun Hee Cho, Roberta D'Agata, Kristian Schlick, Rosy Calvert, Eva M Munoz, Maria Jose Hernaiz, Tsafir Bravman, Monica Dines, Min-Hsiang Yang, Agnes Puskas, Erica Boni, Jiejin Li, Martin Wear, Asya Grinberg, Jason Baardsnes, Olan Dolezal, Melicia Gainey, Henrik Anderson, Jinlin Peng, Mark Lewis, Peter Spies, Quyhn Trinh, Sergei Bibikov, Jill Raymond, Mohammed Yousef, Vidya Chandrasekaran, Yuguo Feng, Anne Emerick, Suparna Mundodo, Rejane Guimaraes, Katy McGirr, Yue-Ji Li, Heather Hughes, Hubert Mantz, Rostislav Skrabana, Mark Witmer, Joshua Ballard, Loic Martin, Petr Skladal, George Korza, Ite Laird-Offringa, Charlene S Lee, Abdelkrim Khadir, Frank Podlaski, Phillippe Neuner, Julie Rothacker, Ashique Rafique, Nico Dankbar, Peter Kainz, Erk Gedig, Momchilo Vuyisich, Christina Boozer, Nguyen Ly, Mark Toews, Aykut Uren, Oleksandr Kalyuzhniy, Kenneth Lewis, Eugene Chomey, Brian J Pak, David G Myszka.   

Abstract

To explore the variability in biosensor studies, 150 participants from 20 countries were given the same protein samples and asked to determine kinetic rate constants for the interaction. We chose a protein system that was amenable to analysis using different biosensor platforms as well as by users of different expertise levels. The two proteins (a 50-kDa Fab and a 60-kDa glutathione S-transferase [GST] antigen) form a relatively high-affinity complex, so participants needed to optimize several experimental parameters, including ligand immobilization and regeneration conditions as well as analyte concentrations and injection/dissociation times. Although most participants collected binding responses that could be fit to yield kinetic parameters, the quality of a few data sets could have been improved by optimizing the assay design. Once these outliers were removed, the average reported affinity across the remaining panel of participants was 620 pM with a standard deviation of 980 pM. These results demonstrate that when this biosensor assay was designed and executed appropriately, the reported rate constants were consistent, and independent of which protein was immobilized and which biosensor was used.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19133223      PMCID: PMC3793259          DOI: 10.1016/j.ab.2008.11.021

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  14 in total

1.  Analyzing a kinetic titration series using affinity biosensors.

Authors:  Robert Karlsson; Phinikoula S Katsamba; Helena Nordin; Ewa Pol; David G Myszka
Journal:  Anal Biochem       Date:  2005-10-13       Impact factor: 3.365

Review 2.  Survey of the year 2005 commercial optical biosensor literature.

Authors:  Rebecca L Rich; David G Myszka
Journal:  J Mol Recognit       Date:  2006 Nov-Dec       Impact factor: 2.137

3.  Exploring "one-shot" kinetics and small molecule analysis using the ProteOn XPR36 array biosensor.

Authors:  Tsafrir Bravman; Vered Bronner; Kobi Lavie; Ariel Notcovich; Giuseppe A Papalia; David G Myszka
Journal:  Anal Biochem       Date:  2006-08-18       Impact factor: 3.365

4.  High-resolution characterization of antibody fragment/antigen interactions using Biacore T100.

Authors:  Giuseppe A Papalia; Mark Baer; Kenneth Luehrsen; Helena Nordin; Peter Flynn; David G Myszka
Journal:  Anal Biochem       Date:  2006-09-22       Impact factor: 3.365

5.  Thermodynamic benchmark study using Biacore technology.

Authors:  Iva Navratilova; Giuseppe A Papalia; Rebecca L Rich; Daniel Bedinger; Susan Brophy; Brad Condon; Ta Deng; Anne W Emerick; Hann-Wen Guan; Tanya Hayden; Thomas Heutmekers; Bart Hoorelbeke; Mark C McCroskey; Mary M Murphy; Terry Nakagawa; Fabio Parmeggiani; Xiaochun Qin; Sabina Rebe; Nenad Tomasevic; Tiffany Tsang; M Brett Waddell; Fred Feiyu Zhang; Stephanie Leavitt; David G Myszka
Journal:  Anal Biochem       Date:  2007-01-26       Impact factor: 3.365

Review 6.  Survey of the year 2007 commercial optical biosensor literature.

Authors:  Rebecca L Rich; David G Myszka
Journal:  J Mol Recognit       Date:  2008 Nov-Dec       Impact factor: 2.137

7.  Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users.

Authors:  Phinikoula S Katsamba; Iva Navratilova; Maria Calderon-Cacia; Linsey Fan; Kevin Thornton; Mingde Zhu; Tim Vanden Bos; Carla Forte; Della Friend; Ite Laird-Offringa; Gisele Tavares; John Whatley; Ergang Shi; Angela Widom; Kevin C Lindquist; Scott Klakamp; Andrew Drake; David Bohmann; Marina Roell; Larry Rose; Jill Dorocke; Bruce Roth; Béatrice Luginbühl; David G Myszka
Journal:  Anal Biochem       Date:  2006-02-23       Impact factor: 3.365

8.  Direct comparison of binding equilibrium, thermodynamic, and rate constants determined by surface- and solution-based biophysical methods.

Authors:  Yasmina S N Day; Cheryl L Baird; Rebecca L Rich; David G Myszka
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

9.  The ABRF-MIRG'02 study: assembly state, thermodynamic, and kinetic analysis of an enzyme/inhibitor interaction.

Authors:  D G Myszka; Y N Abdiche; F Arisaka; O Byron; E Eisenstein; P Hensley; J A Thomson; C R Lombardo; F Schwarz; W Stafford; M L Doyle
Journal:  J Biomol Tech       Date:  2003-12

10.  Comparative analyses of a small molecule/enzyme interaction by multiple users of Biacore technology.

Authors:  Michelle J Cannon; Giuseppe A Papalia; Iva Navratilova; Robert J Fisher; Lindsey R Roberts; Karen M Worthy; Andrew G Stephen; Gerardo R Marchesini; Edward J Collins; Dave Casper; Huawei Qiu; Daulet Satpaev; Stefano F Liparoto; Dax A Rice; Inna I Gorshkova; Ryan J Darling; Donald B Bennett; Michael Sekar; Eric Hommema; Amy M Liang; Eric S Day; Jean Inman; Shannon M Karlicek; Stephen J Ullrich; Dianne Hodges; Teresa Chu; Eric Sullivan; Jack Simpson; Ashique Rafique; Béatrice Luginbühl; Susanne Nyholm Westin; Magdalena Bynum; Paul Cachia; Yue-Jin Li; Daniel Kao; Amy Neurauter; Melanie Wong; Michael Swanson; David G Myszka
Journal:  Anal Biochem       Date:  2004-07-01       Impact factor: 3.365

View more
  17 in total

1.  PD-L1 and PD-L2 differ in their molecular mechanisms of interaction with PD-1.

Authors:  Marguerite Ghiotto; Laurent Gauthier; Nacer Serriari; Sonia Pastor; Alemseged Truneh; Jacques A Nunès; Daniel Olive
Journal:  Int Immunol       Date:  2010-06-29       Impact factor: 4.823

Review 2.  Poxvirus proteomics and virus-host protein interactions.

Authors:  Kim Van Vliet; Mohamed R Mohamed; Leiliang Zhang; Nancy Yaneth Villa; Steven J Werden; Jia Liu; Grant McFadden
Journal:  Microbiol Mol Biol Rev       Date:  2009-12       Impact factor: 11.056

3.  Determination of High-affinity Antibody-antigen Binding Kinetics Using Four Biosensor Platforms.

Authors:  Danlin Yang; Ajit Singh; Helen Wu; Rachel Kroe-Barrett
Journal:  J Vis Exp       Date:  2017-04-17       Impact factor: 1.355

4.  The immunoglobulin G1 N-glycan composition affects binding to each low affinity Fc γ receptor.

Authors:  Ganesh P Subedi; Adam W Barb
Journal:  MAbs       Date:  2016-08-05       Impact factor: 5.857

5.  Characterization of low affinity Fcγ receptor biotinylation under controlled reaction conditions by mass spectrometry and ligand binding analysis.

Authors:  Karin P M Geuijen; David F Egging; Stefanie Bartels; Jan Schouten; Richard B Schasfoort; Michel H Eppink
Journal:  Protein Sci       Date:  2016-08-19       Impact factor: 6.725

6.  Folding-based electrochemical biosensors: the case for responsive nucleic acid architectures.

Authors:  Arica A Lubin; Kevin W Plaxco
Journal:  Acc Chem Res       Date:  2010-04-20       Impact factor: 22.384

7.  Lectin-carbohydrate interactions on nanoporous gold monoliths.

Authors:  Yih Horng Tan; Kohki Fujikawa; Papapida Pornsuriyasak; Allan J Alla; N Vijaya Ganesh; Alexei V Demchenko; Keith J Stine
Journal:  New J Chem       Date:  2013-07-01       Impact factor: 3.591

8.  From dynamic combinatorial 'hit' to lead: in vitro and in vivo activity of compounds targeting the pathogenic RNAs that cause myotonic dystrophy.

Authors:  Leslie O Ofori; Jason Hoskins; Masayuki Nakamori; Charles A Thornton; Benjamin L Miller
Journal:  Nucleic Acids Res       Date:  2012-04-06       Impact factor: 16.971

9.  Peptides of presenilin-1 bind the amyloid precursor protein ectodomain and offer a novel and specific therapeutic approach to reduce ß-amyloid in Alzheimer's disease.

Authors:  Nazneen N Dewji; S Jonathan Singer; Eliezer Masliah; Edward Rockenstein; Mihyun Kim; Martha Harber; Taylor Horwood
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

10.  A versatile cis-blocking and trans-activation strategy for ribozyme characterization.

Authors:  Andrew B Kennedy; Joe C Liang; Christina D Smolke
Journal:  Nucleic Acids Res       Date:  2012-11-15       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.