Literature DB >> 1913208

Compositional variations in DNA sequences.

R Nussinov1.   

Abstract

Biologically occurring nucleotide sequences differ from randomly generated ones. Here we describe general patterns found in prokaryotic and in eukaryotic DNA. In the accompanying paper (Nussinov, 1991) we also describe DNA signals recognized by their corresponding protein factors. In particular, we focus on modes of searches for such patterns and signals and on the potential properties such sequences may possess.

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Year:  1991        PMID: 1913208     DOI: 10.1093/bioinformatics/7.3.287

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  6 in total

1.  Structural and thermodynamic properties of DNA uncover different evolutionary histories.

Authors:  P Miramontes; L Medrano; C Cerpa; R Cedergren; G Ferbeyre; G Cocho
Journal:  J Mol Evol       Date:  1995-06       Impact factor: 2.395

2.  A quality control algorithm for DNA sequencing projects.

Authors:  O White; T Dunning; G Sutton; M Adams; J C Venter; C Fields
Journal:  Nucleic Acids Res       Date:  1993-08-11       Impact factor: 16.971

3.  Modeling binding specificities of transcription factor pairs with random forests.

Authors:  Anni A Antikainen; Markus Heinonen; Harri Lähdesmäki
Journal:  BMC Bioinformatics       Date:  2022-06-03       Impact factor: 3.307

4.  Significance tests and weighted values for AFLP similarities, based on Arabidopsis in silico AFLP fragment length distributions.

Authors:  Wim J M Koopman; Gerrit Gort
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

5.  Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes.

Authors:  Heejoon Chae; Jinwoo Park; Seong-Whan Lee; Kenneth P Nephew; Sun Kim
Journal:  Nucleic Acids Res       Date:  2013-03-21       Impact factor: 16.971

6.  HIV chromatin is a preferred target for drugs that bind in the DNA minor groove.

Authors:  Clayton K Collings; Donald W Little; Samuel J Schafer; John N Anderson
Journal:  PLoS One       Date:  2019-12-30       Impact factor: 3.240

  6 in total

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