Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Structural and thermodynamic properties of DNA uncover different evolutionary histories.

Literature DB >> 7643419

Structural and thermodynamic properties of DNA uncover different evolutionary histories.

P Miramontes¹, L Medrano, C Cerpa, R Cedergren, G Ferbeyre, G Cocho.

Abstract

We propose an index of DNA homogeneity (IDH) based on a binary distribution model that quantifies structural and thermodynamic aggregates present in DNA primary structures. Extensive analysis of sequence databases with the IDH uncovers significant constraints on DNA sequence other than those derived from codon usage or protein function. This index clearly distinguishes between organisms of different evolutive origins and places them in disjoint domains of DNA sequence space.

Mesh：

Substances：
Codon
DNA

Year: 1995 PMID： 7643419 DOI： 10.1007/bf00160519

Source DB: PubMed Journal: J Mol Evol ISSN： 0022-2844 Impact factor: 2.395

30 in total

Review 1. DNA structure from A to Z.

Authors: R E Dickerson
Journal: Methods Enzymol Date: 1992 Impact factor: 1.600

Review 2. Prokaryotic genetic code.

Authors: S Osawa; A Muto; T Ohama; Y Andachi; R Tanaka; F Yamao
Journal: Experientia Date: 1990-12-01

3. Expression of a synthetic gene for horseradish peroxidase C in Escherichia coli and folding and activation of the recombinant enzyme with Ca2+ and heme.

Authors: A T Smith; N Santama; S Dacey; M Edwards; R C Bray; R N Thorneley; J F Burke
Journal: J Biol Chem Date: 1990-08-05 Impact factor: 5.157

4. Compositional constraints and genome evolution.

Authors: G Bernardi; G Bernardi
Journal: J Mol Evol Date: 1986 Impact factor: 2.395

5. Predicting DNA duplex stability from the base sequence.

Authors: K J Breslauer; R Frank; H Blöcker; L A Marky
Journal: Proc Natl Acad Sci U S A Date: 1986-06 Impact factor: 11.205

6. Sites and thermodynamic quantities associated with proton and metal ion interaction with ribonucleic acid, deoxyribonucleic acid, and their constituent bases, nucleosides, and nucleotides.

Authors: R M Izatt; J J Christensen; J H Rytting
Journal: Chem Rev Date: 1971-10 Impact factor: 60.622

Structural and thermodynamic properties of DNA uncover different evolutionary histories.

Review 1. DNA structure from A to Z.

Review 2. Prokaryotic genetic code.

3. Expression of a synthetic gene for horseradish peroxidase C in Escherichia coli and folding and activation of the recombinant enzyme with Ca2+ and heme.

4. Compositional constraints and genome evolution.

5. Predicting DNA duplex stability from the base sequence.

6. Sites and thermodynamic quantities associated with proton and metal ion interaction with ribonucleic acid, deoxyribonucleic acid, and their constituent bases, nucleosides, and nucleotides.

Review 7. Punctualism, non-adaptationism, neutralism and evolution.

8. The isochore patterns of mammalian genomes and their phylogenetic implications.

Review 9. Genome organization and species formation in vertebrates.

10. A model of DNA sequence evolution.

Review 1. Through a genome, darkly: comparative analysis of plant chromosomal DNA.