Literature DB >> 19131113

A GeNorm algorithm-based selection of reference genes for quantitative real-time PCR in skin biopsies of healthy dogs and dogs with atopic dermatitis.

Yvette M Schlotter1, Eveline Z Veenhof, Bas Brinkhof, Victor P M G Rutten, Bart Spee, Ton Willemse, Louis C Penning.   

Abstract

Quantitative real time PCR (Q-PCR) is the method of choice to study mRNA expression levels. Since Q-PCR is very sensitive, normalization of the data with stably expressed reference genes if of utmost importance. The stability of reference genes depends on the tissue and the species of interest. Therefore, evaluation of the stability of reference genes must be performed for each new tissue and species under study. The stability of B2M, GAPDH, HPRT, SRPR, hnRNPH, GUSB, RPL8, RPS5, and RPS19 was analyzed with the GeNorm software in snap frozen canine skin biopsies. Healthy dogs (n=7) and dogs with confirmed atopic dermatitis (n=28) were included. Lesional and non-lesional skin was analyzed. The study indicated that the most appropriate reference genes in canine skin are the ribosomal gene products RPL8, RPS5 and RPS19 besides GUSB and HPRT. As little as three reference genes will reveal highly reliable Q-PCR calculations.

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Year:  2008        PMID: 19131113     DOI: 10.1016/j.vetimm.2008.12.004

Source DB:  PubMed          Journal:  Vet Immunol Immunopathol        ISSN: 0165-2427            Impact factor:   2.046


  24 in total

1.  Evaluation of endogenous reference genes for analysis of gene expression with real-time RT-PCR during planarian regeneration.

Authors:  Yan-Qing Yuwen; Zi-Mei Dong; Qing-Hua Wang; Xiao-Juan Sun; Chang-Ying Shi; Guang-Wen Chen
Journal:  Mol Biol Rep       Date:  2010-12-14       Impact factor: 2.316

2.  Obligate intracellular bacterium Ehrlichia inhibiting mitochondrial activity.

Authors:  Yan Liu; Zhikai Zhang; Yongquan Jiang; Lihong Zhang; Vsevolod L Popov; Jianzhi Zhang; David H Walker; Xue-jie Yu
Journal:  Microbes Infect       Date:  2010-11-09       Impact factor: 2.700

3.  Selection of internal reference genes for normalization of quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis in the canine brain and other organs.

Authors:  Sang-Je Park; Jae-Won Huh; Young-Hyun Kim; Sang-Rae Lee; Sang-Hyun Kim; Sun-Uk Kim; Heui-Soo Kim; Min Kyu Kim; Kyu-Tae Chang
Journal:  Mol Biotechnol       Date:  2013-05       Impact factor: 2.695

4.  Leukocyte count affects expression of reference genes in canine whole blood samples.

Authors:  Christine J Piek; Bas Brinkhof; Jan Rothuizen; Aldo Dekker; Louis C Penning
Journal:  BMC Res Notes       Date:  2011-02-09

5.  Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes).

Authors:  Anna V Kukekova; Jennifer L Johnson; Clotilde Teiling; Lewyn Li; Irina N Oskina; Anastasiya V Kharlamova; Rimma G Gulevich; Ravee Padte; Michael M Dubreuil; Anastasiya V Vladimirova; Darya V Shepeleva; Svetlana G Shikhevich; Qi Sun; Lalit Ponnala; Svetlana V Temnykh; Lyudmila N Trut; Gregory M Acland
Journal:  BMC Genomics       Date:  2011-10-03       Impact factor: 3.969

6.  Evaluation of internal reference genes for quantitative expression analysis by real-time PCR in ovine whole blood.

Authors:  Simone Peletto; Simone Bertuzzi; Chiara Campanella; Paola Modesto; Maria Grazia Maniaci; Claudio Bellino; Dario Ariello; Antonio Quasso; Maria Caramelli; Pier Luigi Acutis
Journal:  Int J Mol Sci       Date:  2011-11-09       Impact factor: 5.923

7.  Real-time PCR quantification of the canine filaggrin orthologue in the skin of atopic and non-atopic dogs: a pilot study.

Authors:  Joana Barros Roque; Caroline A O'Leary; Myat Kyaw-Tanner; David L Duffy; Michael Shipstone
Journal:  BMC Res Notes       Date:  2011-12-21

8.  Gene expression profiling of histiocytic sarcomas in a canine model: the predisposed flatcoated retriever dog.

Authors:  Kim M Boerkamp; Marieke van der Kooij; Frank G van Steenbeek; Monique E van Wolferen; Marian J A Groot Koerkamp; Dik van Leenen; Guy C M Grinwis; Louis C Penning; Erik A C Wiemer; Gerard R Rutteman
Journal:  PLoS One       Date:  2013-08-01       Impact factor: 3.240

9.  Inhibition of survivin influences the biological activities of canine histiocytic sarcoma cell lines.

Authors:  Hiroki Yamazaki; Satoshi Takagi; Yuki Hoshino; Kenji Hosoya; Masahiro Okumura
Journal:  PLoS One       Date:  2013-11-15       Impact factor: 3.240

10.  The two main forms of histiocytic sarcoma in the predisposed Flatcoated retriever dog display variation in gene expression.

Authors:  Kim M Boerkamp; Frank G van Steenbeek; Louis C Penning; Marian J A Groot Koerkamp; Dik van Leenen; Manon Vos-Loohuis; Guy C M Grinwis; Gerard R Rutteman
Journal:  PLoS One       Date:  2014-06-02       Impact factor: 3.240

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