Literature DB >> 21161407

Evaluation of endogenous reference genes for analysis of gene expression with real-time RT-PCR during planarian regeneration.

Yan-Qing Yuwen1, Zi-Mei Dong, Qing-Hua Wang, Xiao-Juan Sun, Chang-Ying Shi, Guang-Wen Chen.   

Abstract

It is important that endogenous reference genes for real-time RT-PCR be empirically evaluated for stability in different cell types, developmental stages, and/or sample treatment. To select the most stable endogenous reference genes during planarian regeneration, three housekeeping genes, 18S rRNA, ACTB and DjEF2, were identified and established expression levels by real-time RT-PCR. The data were analyzed by GeNorm and NormFinder software. Expression levels of the Djsix-1 gene were studied in parallel with ACTB and DjEF2 both or each and 18S rRNA as reference during regeneration. The results showed that ACTB was the most stable expressed reference gene in the planarian regeneration.

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Year:  2010        PMID: 21161407     DOI: 10.1007/s11033-010-0570-8

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  25 in total

1.  Guideline to reference gene selection for quantitative real-time PCR.

Authors:  Aleksandar Radonić; Stefanie Thulke; Ian M Mackay; Olfert Landt; Wolfgang Siegert; Andreas Nitsche
Journal:  Biochem Biophys Res Commun       Date:  2004-01-23       Impact factor: 3.575

2.  Djeyes absent (Djeya) controls prototypic planarian eye regeneration by cooperating with the transcription factor Djsix-1.

Authors:  Linda Mannini; Leonardo Rossi; Paolo Deri; Vittorio Gremigni; Alessandra Salvetti; Emili Saló; Renata Batistoni
Journal:  Dev Biol       Date:  2004-05-15       Impact factor: 3.582

Review 3.  Planarian regeneration: achievements and future directions after 20 years of research.

Authors:  Emili Saló; Josep F Abril; Teresa Adell; Francesc Cebrià; Kay Eckelt; Enrique Fernandez-Taboada; Mette Handberg-Thorsager; Marta Iglesias; Maria Dolores Molina; Gustavo Rodríguez-Esteban
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

4.  Increased glyceraldehyde-3-phosphate dehydrogenase expression in renal cell carcinoma identified by RNA-based, arbitrarily primed polymerase chain reaction.

Authors:  M R Vilà; A Nicolás; J Morote; I de; A Meseguer
Journal:  Cancer       Date:  2000-07-01       Impact factor: 6.860

5.  Glyceraldehyde-3-phosphate dehydrogenase gene expression in human breast cancer.

Authors:  F Révillion; V Pawlowski; L Hornez; J P Peyrat
Journal:  Eur J Cancer       Date:  2000-05       Impact factor: 9.162

6.  Selection of reference genes for quantitative real-time PCR analysis in canine mammary tumors using the GeNorm algorithm.

Authors:  B Etschmann; B Wilcken; K Stoevesand; A von der Schulenburg; A Sterner-Kock
Journal:  Vet Pathol       Date:  2006-11       Impact factor: 2.221

7.  GeneChip, geNorm, and gastrointestinal tumors: novel reference genes for real-time PCR.

Authors:  Mark Kidd; Boaz Nadler; Shrikant Mane; Geeta Eick; Maximillian Malfertheiner; Manish Champaneria; Roswitha Pfragner; Irvin Modlin
Journal:  Physiol Genomics       Date:  2007-04-24       Impact factor: 3.107

8.  Selection of housekeeping genes for gene expression studies on the development of fruit bearing shoots in Chinese jujube (Ziziphus jujube Mill.).

Authors:  Hai-Feng Sun; Yu-Ping Meng; Gui-Mei Cui; Qiu-Fen Cao; Jie Li; Ai-Hua Liang
Journal:  Mol Biol Rep       Date:  2008-12-25       Impact factor: 2.316

9.  Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae.

Authors:  Marie-Ange Teste; Manon Duquenne; Jean M François; Jean-Luc Parrou
Journal:  BMC Mol Biol       Date:  2009-10-30       Impact factor: 2.946

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

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  1 in total

1.  Characterization of reference genes for quantitative real-time PCR analysis in various tissues of Anoectochilus roxburghii.

Authors:  Gang Zhang; Mingming Zhao; Chao Song; Anxiong Luo; Jianfa Bai; Shunxing Guo
Journal:  Mol Biol Rep       Date:  2011-12-27       Impact factor: 2.316

  1 in total

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