Literature DB >> 19128029

Critical role of the solvent environment in galectin-1 binding to the disaccharide lactose.

Santiago Di Lella1, Lu Ma, Juan C Díaz Ricci, Gabriel A Rabinovich, Sanford A Asher, R María S Alvarez.   

Abstract

Galectin-1 (Gal-1), a member of a family of evolutionarily conserved glycan-binding proteins, binds specifically to poly-N-acetyllactosamine-enriched glycoconjugates. Through interactions with these glycoconjugates, this protein modulates inflammatory responses and contributes to tumor progression and immune cell homeostasis. The carbohydrate recognition domain includes the single protein tryptophan (Trp68). UV resonance Raman spectroscopy and molecular dynamic simulation were used to examine the change in the environment of the Trp on ligand binding. The UV Raman spectra and the calculated water radial distribution functions show that, while no large structural changes in the protein follow lactose binding, substantial solvent reorganization occurs. These new insights into the microscopic role of water molecules in Gal-1 binding to its specific carbohydrate ligands provides a better understanding of the physicochemical properties of Gal-1-saccharide interactions, which will be useful for the design of synthetic inhibitors for therapeutic purposes.

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Year:  2009        PMID: 19128029      PMCID: PMC2633424          DOI: 10.1021/bi801855g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

1.  NMR investigations of protein-carbohydrate interactions: studies on the relevance of Trp/Tyr variations in lectin binding sites as deduced from titration microcalorimetry and NMR studies on hevein domains. Determination of the NMR structure of the complex between pseudohevein and N,N',N"-triacetylchitotriose.

Authors:  J L Asensio; H C Siebert; C W von Der Lieth; J Laynez; M Bruix; U M Soedjanaamadja; J J Beintema; F J Cañada; H J Gabius; J Jiménez-Barbero
Journal:  Proteins       Date:  2000-08-01

2.  Preparation of recombinant human galectin-1 and use in T-cell death assays.

Authors:  Karen E Pace; Hejin P Hahn; Linda G Baum
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

3.  Characterization of individual tryptophan side chains in proteins using Raman spectroscopy and hydrogen-deuterium exchange kinetics.

Authors:  T Miura; H Takeuchi; I Harada
Journal:  Biochemistry       Date:  1988-01-12       Impact factor: 3.162

Review 4.  UV resonance Raman spectroscopy for analytical, physical, and biophysical chemistry. Part 2.

Authors:  S A Asher
Journal:  Anal Chem       Date:  1993-02-15       Impact factor: 6.986

5.  Involvement of water in carbohydrate-protein binding.

Authors:  C Clarke; R J Woods; J Gluska; A Cooper; M A Nutley; G J Boons
Journal:  J Am Chem Soc       Date:  2001-12-12       Impact factor: 15.419

6.  Molecular dynamics simulations of galectin-1-oligosaccharide complexes reveal the molecular basis for ligand diversity.

Authors:  Michael G Ford; Thomas Weimar; Thies Köhli; Robert J Woods
Journal:  Proteins       Date:  2003-11-01

Review 7.  Oligosaccharide specificity of galectins: a search by frontal affinity chromatography.

Authors:  Jun Hirabayashi; Tomomi Hashidate; Yoichiro Arata; Nozomu Nishi; Takanori Nakamura; Mitsuomi Hirashima; Tadasu Urashima; Toshihiko Oka; Masamitsu Futai; Werner E G Muller; Fumio Yagi; Ken-ichi Kasai
Journal:  Biochim Biophys Acta       Date:  2002-09-19

8.  Thermodynamic binding studies of bivalent oligosaccharides to galectin-1, galectin-3, and the carbohydrate recognition domain of galectin-3.

Authors:  Nisar Ahmad; Hans-J Gabius; Subramanian Sabesan; Stefan Oscarson; C Fred Brewer
Journal:  Glycobiology       Date:  2004-05-17       Impact factor: 4.313

9.  Growth-regulatory human galectin-1: crystallographic characterisation of the structural changes induced by single-site mutations and their impact on the thermodynamics of ligand binding.

Authors:  María F López-Lucendo; Dolores Solís; Sabine André; Jun Hirabayashi; Ken-ichi Kasai; Herbert Kaltner; Hans-Joachim Gabius; Antonio Romero
Journal:  J Mol Biol       Date:  2004-10-29       Impact factor: 5.469

10.  Raman structural markers of tryptophan and histidine side chains in proteins.

Authors:  Hideo Takeuchi
Journal:  Biopolymers       Date:  2003       Impact factor: 2.505

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  12 in total

1.  Engineering the Pseudomonas aeruginosa II lectin: designing mutants with changed affinity and specificity.

Authors:  Zdeněk Kříž; Jan Adam; Jana Mrázková; Petros Zotos; Thomais Chatzipavlou; Michaela Wimmerová; Jaroslav Koča
Journal:  J Comput Aided Mol Des       Date:  2014-07-12       Impact factor: 3.686

2.  Disaccharide binding to galectin-1: free energy calculations and molecular recognition mechanism.

Authors:  Ignacia Echeverria; L Mario Amzel
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

3.  Development of a nascent galectin-1 chimeric molecule for studying the role of leukocyte galectin-1 ligands and immune disease modulation.

Authors:  Filiberto Cedeno-Laurent; Steven R Barthel; Matthew J Opperman; David M Lee; Rachael A Clark; Charles J Dimitroff
Journal:  J Immunol       Date:  2010-09-15       Impact factor: 5.422

Review 4.  When galectins recognize glycans: from biochemistry to physiology and back again.

Authors:  Santiago Di Lella; Victoria Sundblad; Juan P Cerliani; Carlos M Guardia; Dario A Estrin; Gerardo R Vasta; Gabriel A Rabinovich
Journal:  Biochemistry       Date:  2011-08-26       Impact factor: 3.162

5.  Structure and binding analysis of Polyporus squamosus lectin in complex with the Neu5Ac{alpha}2-6Gal{beta}1-4GlcNAc human-type influenza receptor.

Authors:  Renuka Kadirvelraj; Oliver C Grant; Irwin J Goldstein; Harry C Winter; Hiroaki Tateno; Elisa Fadda; Robert J Woods
Journal:  Glycobiology       Date:  2011-03-24       Impact factor: 4.313

6.  Structure-based identification of galectin-1 selective modulators in dietary food polyphenols: a pharmacoinformatics approach.

Authors:  Shovonlal Bhowmick; Achintya Saha; Nora Abdullah AlFaris; Jozaa Zaidan ALTamimi; Zeid A ALOthman; Tahany Saleh Aldayel; Saikh Mohammad Wabaidur; Md Ataul Islam
Journal:  Mol Divers       Date:  2021-09-05       Impact factor: 3.364

Review 7.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

8.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

9.  The carbohydrate-binding site in galectin-3 is preorganized to recognize a sugarlike framework of oxygens: ultra-high-resolution structures and water dynamics.

Authors:  Kadhirvel Saraboji; Maria Håkansson; Samuel Genheden; Carl Diehl; Johan Qvist; Ulrich Weininger; Ulf J Nilsson; Hakon Leffler; Ulf Ryde; Mikael Akke; Derek T Logan
Journal:  Biochemistry       Date:  2011-12-07       Impact factor: 3.162

10.  Generation of self-clusters of galectin-1 in the farnesyl-bound form.

Authors:  Kazumi Yamaguchi; Yusuke Niwa; Takakazu Nakabayashi; Hirotsugu Hiramatsu
Journal:  Sci Rep       Date:  2016-09-14       Impact factor: 4.379

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