Literature DB >> 19127588

Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 A resolution.

Debanu Das1, S Sri Krishna, Daniel McMullan, Mitchell D Miller, Qingping Xu, Polat Abdubek, Claire Acosta, Tamara Astakhova, Herbert L Axelrod, Prasad Burra, Dennis Carlton, Hsiu-Ju Chiu, Thomas Clayton, Marc C Deller, Lian Duan, Ylva Elias, Marc-André Elsliger, Dustin Ernst, Julie Feuerhelm, Anna Grzechnik, Slawomir K Grzechnik, Joanna Hale, Gye Won Han, Lukasz Jaroszewski, Kevin K Jin, Heath E Klock, Mark W Knuth, Piotr Kozbial, Abhinav Kumar, David Marciano, Andrew T Morse, Kevin D Murphy, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Jessica Paulsen, Ron Reyes, Christopher L Rife, Natasha Sefcovic, Henry Tien, Christine B Trame, Christina V Trout, Henry van den Bedem, Dana Weekes, Aprilfawn White, Keith O Hodgson, John Wooley, Ashley M Deacon, Adam Godzik, Scott A Lesley, Ian A Wilson.   

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Year:  2009        PMID： 19127588      PMCID： PMC2674511          DOI： 10.1002/prot.22338

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  31 in total

Review 1.  Validation of protein crystal structures.

Authors:  G J Kleywegt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

2.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

3.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

Review 4.  The many faces of the helix-turn-helix domain: transcription regulation and beyond.

Authors:  L Aravind; Vivek Anantharaman; Santhanam Balaji; M Mohan Babu; Lakshminarayan M Iyer
Journal:  FEMS Microbiol Rev       Date:  2005-04       Impact factor: 16.408

5.  Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

Authors:  Weizhong Li; Adam Godzik
Journal:  Bioinformatics       Date:  2006-05-26       Impact factor: 6.937

6.  Regulation of the activity of the type IC EcoR124I restriction enzyme.

Authors:  E M Kulik; T A Bickle
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

7.  An automated system to mount cryo-cooled protein crystals on a synchrotron beam line, using compact sample cassettes and a small-scale robot.

Authors:  Aina E Cohen; Paul J Ellis; Mitchell D Miller; Ashley M Deacon; R Paul Phizackerley
Journal:  J Appl Crystallogr       Date:  2002-12       Impact factor: 3.304

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

9.  Many gene-regulatory proteins appear to have a similar alpha-helical fold that binds DNA and evolved from a common precursor.

Authors:  D H Ohlendorf; W F Anderson; B W Matthews
Journal:  J Mol Evol       Date:  1983       Impact factor: 2.395

10.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04
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  13 in total

1.  Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain.

Authors:  Phi Luong; Lisa N Kinch; Chad A Brautigam; Nick V Grishin; Diana R Tomchick; Kim Orth
Journal:  J Biol Chem       Date:  2010-04-21       Impact factor: 5.157

2.  Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.

Authors:  Philipp Engel; Arnaud Goepfert; Frédéric V Stanger; Alexander Harms; Alexander Schmidt; Tilman Schirmer; Christoph Dehio
Journal:  Nature       Date:  2012-01-22       Impact factor: 49.962

Review 3.  Structure and function of Fic proteins.

Authors:  Craig R Roy; Jacqueline Cherfils
Journal:  Nat Rev Microbiol       Date:  2015-08-24       Impact factor: 60.633

Review 4.  Enzymes Involved in AMPylation and deAMPylation.

Authors:  Amanda K Casey; Kim Orth
Journal:  Chem Rev       Date:  2017-08-18       Impact factor: 60.622

5.  Plasmids with a chromosome-like role in rhizobia.

Authors:  Cristina Landeta; Araceli Dávalos; Miguel Ángel Cevallos; Otto Geiger; Susana Brom; David Romero
Journal:  J Bacteriol       Date:  2011-01-07       Impact factor: 3.490

6.  Fic domain-catalyzed adenylylation: insight provided by the structural analysis of the type IV secretion system effector BepA.

Authors:  Dinesh V Palanivelu; Arnaud Goepfert; Marcel Meury; Patrick Guye; Christoph Dehio; Tilman Schirmer
Journal:  Protein Sci       Date:  2011-02-17       Impact factor: 6.725

7.  Structural basis of Fic-mediated adenylylation.

Authors:  Junyu Xiao; Carolyn A Worby; Seema Mattoo; Banumathi Sankaran; Jack E Dixon
Journal:  Nat Struct Mol Biol       Date:  2010-07-11       Impact factor: 15.369

8.  Protein expression, characterization, crystallization and preliminary X-ray crystallographic analysis of a Fic protein from Clostridium difficile.

Authors:  Ditte Welner; Emil Dedic; Hans C van Leeuwen; Ed Kuijper; Morten Jannik Bjerrum; Ole Østergaard; René Jørgensen
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-25       Impact factor: 1.056

9.  Comparative analysis of Histophilus somni immunoglobulin-binding protein A (IbpA) with other fic domain-containing enzymes reveals differences in substrate and nucleotide specificities.

Authors:  Seema Mattoo; Eric Durrant; Mark J Chen; Junyu Xiao; Cheri S Lazar; Gerard Manning; Jack E Dixon; Carolyn A Worby
Journal:  J Biol Chem       Date:  2011-07-27       Impact factor: 5.157

10.  Conserved inhibitory mechanism and competent ATP binding mode for adenylyltransferases with Fic fold.

Authors:  Arnaud Goepfert; Frédéric V Stanger; Christoph Dehio; Tilman Schirmer
Journal:  PLoS One       Date:  2013-05-30       Impact factor: 3.240
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