Literature DB >> 19125628

Inductive transfer of knowledge: application of multi-task learning and feature net approaches to model tissue-air partition coefficients.

Alexandre Varnek1, Cédric Gaudin, Gilles Marcou, Igor Baskin, Anil Kumar Pandey, Igor V Tetko.   

Abstract

Two inductive knowledge transfer approaches - multitask learning (MTL) and Feature Net (FN) - have been used to build predictive neural networks (ASNN) and PLS models for 11 types of tissue-air partition coefficients (TAPC). Unlike conventional single-task learning (STL) modeling focused only on a single target property without any relations to other properties, in the framework of inductive transfer approach, the individual models are viewed as nodes in the network of interrelated models built in parallel (MTL) or sequentially (FN). It has been demonstrated that MTL and FN techniques are extremely useful in structure-property modeling on small and structurally diverse data sets, when conventional STL modeling is unable to produce any predictive model. The predictive STL individual models were obtained for 4 out of 11 TAPC, whereas application of inductive knowledge transfer techniques resulted in models for 9 TAPC. Differences in prediction performances of the models as a function of the machine-learning method, and of the number of properties simultaneously involved in the learning, has been discussed.

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Year:  2009        PMID: 19125628     DOI: 10.1021/ci8002914

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  16 in total

1.  Multi-task learning for pKa prediction.

Authors:  Grigorios Skolidis; Katja Hansen; Guido Sanguinetti; Matthias Rupp
Journal:  J Comput Aided Mol Des       Date:  2012-06-20       Impact factor: 3.686

Review 2.  QSAR without borders.

Authors:  Eugene N Muratov; Jürgen Bajorath; Robert P Sheridan; Igor V Tetko; Dmitry Filimonov; Vladimir Poroikov; Tudor I Oprea; Igor I Baskin; Alexandre Varnek; Adrian Roitberg; Olexandr Isayev; Stefano Curtarolo; Denis Fourches; Yoram Cohen; Alan Aspuru-Guzik; David A Winkler; Dimitris Agrafiotis; Artem Cherkasov; Alexander Tropsha
Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

3.  QSAR modeling: where have you been? Where are you going to?

Authors:  Artem Cherkasov; Eugene N Muratov; Denis Fourches; Alexandre Varnek; Igor I Baskin; Mark Cronin; John Dearden; Paola Gramatica; Yvonne C Martin; Roberto Todeschini; Viviana Consonni; Victor E Kuz'min; Richard Cramer; Romualdo Benigni; Chihae Yang; James Rathman; Lothar Terfloth; Johann Gasteiger; Ann Richard; Alexander Tropsha
Journal:  J Med Chem       Date:  2014-01-06       Impact factor: 7.446

4.  Multi-task generative topographic mapping in virtual screening.

Authors:  Arkadii Lin; Dragos Horvath; Gilles Marcou; Bernd Beck; Alexandre Varnek
Journal:  J Comput Aided Mol Des       Date:  2019-02-09       Impact factor: 3.686

5.  Prediction of Combined Sorbent and Catalyst Materials for SE-SMR, Using QSPR and Multitask Learning.

Authors:  Paula Nkulikiyinka; Stuart T Wagland; Vasilije Manovic; Peter T Clough
Journal:  Ind Eng Chem Res       Date:  2022-06-23       Impact factor: 4.326

6.  Computational chemogenomics: is it more than inductive transfer?

Authors:  J B Brown; Yasushi Okuno; Gilles Marcou; Alexandre Varnek; Dragos Horvath
Journal:  J Comput Aided Mol Des       Date:  2014-04-27       Impact factor: 3.686

7.  Identification of putative estrogen receptor-mediated endocrine disrupting chemicals using QSAR- and structure-based virtual screening approaches.

Authors:  Liying Zhang; Alexander Sedykh; Ashutosh Tripathi; Hao Zhu; Antreas Afantitis; Varnavas D Mouchlis; Georgia Melagraki; Ivan Rusyn; Alexander Tropsha
Journal:  Toxicol Appl Pharmacol       Date:  2013-05-23       Impact factor: 4.219

8.  Large-Scale Modeling of Multispecies Acute Toxicity End Points Using Consensus of Multitask Deep Learning Methods.

Authors:  Sankalp Jain; Vishal B Siramshetty; Vinicius M Alves; Eugene N Muratov; Nicole Kleinstreuer; Alexander Tropsha; Marc C Nicklaus; Anton Simeonov; Alexey V Zakharov
Journal:  J Chem Inf Model       Date:  2021-02-03       Impact factor: 4.956

9.  Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information.

Authors:  Iurii Sushko; Sergii Novotarskyi; Robert Körner; Anil Kumar Pandey; Matthias Rupp; Wolfram Teetz; Stefan Brandmaier; Ahmed Abdelaziz; Volodymyr V Prokopenko; Vsevolod Y Tanchuk; Roberto Todeschini; Alexandre Varnek; Gilles Marcou; Peter Ertl; Vladimir Potemkin; Maria Grishina; Johann Gasteiger; Christof Schwab; Igor I Baskin; Vladimir A Palyulin; Eugene V Radchenko; William J Welsh; Vladyslav Kholodovych; Dmitriy Chekmarev; Artem Cherkasov; Joao Aires-de-Sousa; Qing-You Zhang; Andreas Bender; Florian Nigsch; Luc Patiny; Antony Williams; Valery Tkachenko; Igor V Tetko
Journal:  J Comput Aided Mol Des       Date:  2011-06-10       Impact factor: 3.686

10.  Prediction of Broad-Spectrum Pathogen Attachment to Coating Materials for Biomedical Devices.

Authors:  Paulius Mikulskis; Andrew Hook; Adam A Dundas; Derek Irvine; Olutoba Sanni; Daniel Anderson; Robert Langer; Morgan R Alexander; Paul Williams; David A Winkler
Journal:  ACS Appl Mater Interfaces       Date:  2018-01-02       Impact factor: 10.383

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