Literature DB >> 19124572

The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea.

Camilla L Nesbø1, Eric Bapteste, Bruce Curtis, Håkon Dahle, Philippe Lopez, Dave Macleod, Marlena Dlutek, Sharen Bowman, Olga Zhaxybayeva, Nils-Kåre Birkeland, W Ford Doolittle.   

Abstract

Lateral gene transfers (LGT) (also called horizontal gene transfers) have been a major force shaping the Thermosipho africanus TCF52B genome, whose sequence we describe here. Firmicutes emerge as the principal LGT partner. Twenty-six percent of phylogenetic trees suggest LGT with this group, while 13% of the open reading frames indicate LGT with Archaea.

Entities:  

Mesh：

Year:  2009        PMID： 19124572      PMCID： PMC2648366          DOI： 10.1128/JB.01448-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  19 in total

1.  Origin of replication of Thermotoga maritima.

Authors:  P Lopez; P Forterre; H le Guyader; H Philippe
Journal:  Trends Genet       Date:  2000-02       Impact factor: 11.639

2.  Isolation and characterization of Thermococcus sibiricus sp. nov. from a Western Siberia high-temperature oil reservoir.

Authors:  M L Miroshnichenko; H Hippe; E Stackebrandt; N A Kostrikina; N A Chernyh; C Jeanthon; T N Nazina; S S Belyaev; E A Bonch-Osmolovskaya
Journal:  Extremophiles       Date:  2001-04       Impact factor: 2.395

3.  PhyloGenie: automated phylome generation and analysis.

Authors:  Tancred Frickey; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2004-09-30       Impact factor: 16.971

4.  Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments.

Authors:  Camilla L Nesbø; Marlena Dlutek; Olga Zhaxybayeva; W Ford Doolittle
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 5.  CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

Authors:  Rotem Sorek; Victor Kunin; Philip Hugenholtz
Journal:  Nat Rev Microbiol       Date:  2008-03       Impact factor: 60.633

6.  Archaeoglobus fulgidus Isolated from Hot North Sea Oil Field Waters.

Authors:  J Beeder; R K Nilsen; J T Rosnes; T Torsvik; T Lien
Journal:  Appl Environ Microbiol       Date:  1994-04       Impact factor: 4.792

7.  Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species.

Authors:  Emmanuel F Mongodin; Ioana R Hance; Robert T Deboy; Steven R Gill; Sean Daugherty; Robert Huber; Claire M Fraser; Karl Stetter; Karen E Nelson
Journal:  J Bacteriol       Date:  2005-07       Impact factor: 3.490

8.  Radioisotopic, culture-based, and oligonucleotide microchip analyses of thermophilic microbial communities in a continental high-temperature petroleum reservoir.

Authors:  Elizaveta A Bonch-Osmolovskaya; Margarita L Miroshnichenko; Alexander V Lebedinsky; Nikolai A Chernyh; Tamara N Nazina; Valery S Ivoilov; Sergey S Belyaev; Eugenia S Boulygina; Yury P Lysov; Alexander N Perov; Andrei D Mirzabekov; Hans Hippe; Erko Stackebrandt; Stéphane L'Haridon; Christian Jeanthon
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

9.  Recognizing the pseudogenes in bacterial genomes.

Authors:  Emmanuelle Lerat; Howard Ochman
Journal:  Nucleic Acids Res       Date:  2005-06-02       Impact factor: 16.971

10.  A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.

Authors:  Kira S Makarova; Nick V Grishin; Svetlana A Shabalina; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2006-03-16       Impact factor: 4.540
View more
  13 in total

Review 1.  Biased gene transfer in microbial evolution.

Authors:  Cheryl P Andam; J Peter Gogarten
Journal:  Nat Rev Microbiol       Date:  2011-06-13       Impact factor: 60.633

2.  Putative thioredoxin Trx1 from Thermosipho africanus strain TCF52B: expression, purification and structural determination using S-SAD.

Authors:  Naheda Sahtout; Jijin R A Kuttiyatveetil; Michel Fodje; David A R Sanders
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-05-23       Impact factor: 1.056

3.  Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli.

Authors:  Julie Beauregard-Racine; Cédric Bicep; Klaus Schliep; Philippe Lopez; François-Joseph Lapointe; Eric Bapteste
Journal:  Biol Direct       Date:  2011-07-20       Impact factor: 4.540

4.  Lateral transfer of genes and gene fragments in prokaryotes.

Authors:  Cheong Xin Chan; Robert G Beiko; Aaron E Darling; Mark A Ragan
Journal:  Genome Biol Evol       Date:  2009-11-04       Impact factor: 3.416

5.  Fe(III) oxides protect fermenter-methanogen syntrophy against interruption by elemental sulfur via stiffening of Fe(II) sulfides produced by sulfur respiration.

Authors:  Kensuke Igarashi; Tomohiko Kuwabara
Journal:  Extremophiles       Date:  2014-01-14       Impact factor: 2.395

6.  Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01.

Authors:  Kamini Gounder; Elzbieta Brzuszkiewicz; Heiko Liesegang; Antje Wollherr; Rolf Daniel; Gerhard Gottschalk; Oleg Reva; Benjamin Kumwenda; Malay Srivastava; Carlos Bricio; José Berenguer; Esta van Heerden; Derek Litthauer
Journal:  BMC Genomics       Date:  2011-11-24       Impact factor: 3.969

7.  SICLE: a high-throughput tool for extracting evolutionary relationships from phylogenetic trees.

Authors:  Dan F DeBlasio; Jennifer H Wisecaver
Journal:  PeerJ       Date:  2016-08-23       Impact factor: 2.984

8.  Biochemical properties of GH94 cellodextrin phosphorylase THA_1941 from a thermophilic eubacterium Thermosipho africanus TCF52B with cellobiose phosphorylase activity.

Authors:  Yuanyuan Wu; Guotao Mao; Haiyan Fan; Andong Song; Yi-Heng Percival Zhang; Hongge Chen
Journal:  Sci Rep       Date:  2017-07-07       Impact factor: 4.379

9.  Genome sequence of the mesophilic Thermotogales bacterium Mesotoga prima MesG1.Ag.4.2 reveals the largest Thermotogales genome to date.

Authors:  Olga Zhaxybayeva; Kristen S Swithers; Julia Foght; Anna G Green; David Bruce; Chris Detter; Shunsheng Han; Hazuki Teshima; James Han; Tanja Woyke; Sam Pitluck; Matt Nolan; Natalia Ivanova; Amrita Pati; Miriam L Land; Marlena Dlutek; W Ford Doolittle; Kenneth M Noll; Camilla L Nesbø
Journal:  Genome Biol Evol       Date:  2012-07-12       Impact factor: 3.416

10.  Vitamin B(12) synthesis and salvage pathways were acquired by horizontal gene transfer to the Thermotogales.

Authors:  Kristen S Swithers; Amanda K Petrus; Michael A Secinaro; Camilla L Nesbø; J Peter Gogarten; Kenneth M Noll; Nicholas C Butzin
Journal:  Genome Biol Evol       Date:  2012-07-12       Impact factor: 3.416
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.