| Literature DB >> 19116383 |
Anieta M Sieuwerts1, Jaco Kraan, Joan Bolt, Petra van der Spoel, Fons Elstrodt, Mieke Schutte, John W M Martens, Jan-Willem Gratama, Stefan Sleijfer, John A Foekens.
Abstract
Identification of specific subtypes of circulating tumor cells in peripheral blood of cancer patients can provide information about the biology of metastasis and improve patient management. However, to be effective, the method used to identify circulating tumor cells must detect all tumor cell types. We investigated whether the five subtypes of human breast cancer cells that have been defined by global gene expression profiling-normal-like, basal, HER2-positive, and luminal A and B-were identified by CellSearch, a US Food and Drug Administration-approved test that uses antibodies against the cell surface-expressed epithelial cell adhesion molecule (EpCAM) to isolate circulating tumor cells. We used global gene expression profiling to determine the subtypes of a well-defined panel of 34 human breast cancer cell lines (15 luminal, nine normal-like, five basal-like, and five Her2-positive). We mixed 50-150 cells from 10 of these cell lines with 7.5 mL of blood from a single healthy human donor, and the mixtures were subjected to the CellSearch test to isolate the breast cancer cells. We found that the CellSearch isolation method, which uses EpCAM on the surface of circulating tumor cells for cell isolation, did not recognize, in particular, normal-like breast cancer cells, which in general have aggressive features. New tests that include antibodies that specifically recognize normal-like breast tumor cells but not cells of hematopoietic origin are needed.Entities:
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Year: 2008 PMID: 19116383 PMCID: PMC2639293 DOI: 10.1093/jnci/djn419
Source DB: PubMed Journal: J Natl Cancer Inst ISSN: 0027-8874 Impact factor: 13.506
mRNA expression in breast cancer cell lines with different intrinsic subtype characteristics*
| Relative mRNA expression (95% CI) | Relative mRNA expression (95% CI) | ||||||
| Gene symbol (antigen) | Normal-like (n = 9) | Basal-like (n = 5) | Luminal (n = 15) | HER2-positive (n = 5) | Blood before enrichment (n = 6) | Blood after enrichment (n = 23) | |
| 0.00 (0.00 to 0.00) | 0.00 (0.00 to 0.00) | 0.00 (0.00 to 0.00) | 0.00 (0.00 to 0.00) | .210 | 13.39 (10.42 to 16.37) | 6.25 (4.99 to 7.50) | |
| 0.40 (0.03 to 0.78) | 2.31 (0.20 to 4.42) | 3.84 (2.14 to 5.54) | 2.69 (1.86 to 3.52) | .025 | 0.03 (0.02 to 0.03) | 0.03 (0.01 to 0.06) | |
| 0.77 (0.59 to 0.95) | 0.75 (0.40 to 1.10) | 0.04 (0.02 to 0.06) | 0.02 (0.00 to 0.04) | <.001 | 3.85 (3.13 to 4.57) | 3.90 (3.29 to 4.52) | |
| 0.04 (0.00 to 0.10) | 2.04 (0.83 to 3.25) | 8.72 (4.02 to 13.43) | 4.43 (2.17 to 6.69) | .020 | 0.00 | 0.01 (0.00 to 0.02) | |
| 0.32 (0.20 to 0.44) | 0.35 (0.15 to 0.55) | 1.88 (1.24 to 2.52) | 0.53 (0.43 to 0.63) | <.001 | 0.03 (0.02 to 0.05) | 0.01 (0.00 to 0.02) | |
| 5.04 (2.39 to 7.70) | 1.70 (0.19 to 3.21) | 0.05 (0.02 to 0.08) | 0.03 (0.01 to 0.05) | <.001 | 0.02 (0.01 to 0.04) | 0.05 (0.00 to 0.01) | |
| 1.53 (0.00 to 3.07) | 7.90 (5.63 to 10.17) | 6.62 (3.62 to 9.63) | 10.46 (6.45 to 14.48) | .009 | 0.01 (0.00 to 0.02) | 0.01 (0.00 to 0.01) | |
| 5.58 (0.96 to 10.19) | 10.06 (7.88 to 12.24) | 16.80 (13.23 to 20.36) | 17.17 (12.11 to 22.23) | .001 | 0.06 (0.03 to 0.09) | 0.03 (0.02 to 0.03) | |
| 0.09 (0.00 to 0.26) | 4.53 (0.00 to 9.11) | 28.35 (12.66 to 44.03) | 11.99 (1.58 to 22.40) | .022 | 0.00 (0.00 to 0.00) | 0.00 (0.00 to 0.00) | |
| 0.00 (0.00 to 0.00) | 0.02 (0.01 to 0.03) | 0.76 (0.37 to 1.14) | 0.06 (0.00 to 0.16) | .003 | 0.02 (0.01 to 0.03) | 0.01 (0.00 to 0.02) | |
| 0.20 (0.10 to 0.30) | 0.96 (0.00 to 2.01) | 0.03 (0.01 to 0.05) | 0.07 (0.00 to 0.14) | .003 | 0.00 (0.00 to 0.00) | 0.00 (0.00 to 0.00) | |
| 0.05 (0.03 to 0.06) | 0.07 (0.02 to 0.12) | 2.53 (0.13 to 4.94) | 7.69 (2.28 to 13.09) | .009 | 0.02 (0.01 to 0.03) | 0.01 (0.00 to 0.01) | |
| 0.06 (0.01 to 0.11) | 0.00 (0.00 to 0.00) | 0.01 (0.00 to 0.02) | 0.00 (0.00 to 0.00) | .027 | 0.00 (0.00 to 0.00) | 0.00 (0.00 to 0.00) | |
| 101.56 (36.90 to 116.23) | 0.43 (0.00 to 0.90) | 0.30 (0.00 to 0.67) | 0.10 (0.00 to 0.27) | <.001 | 34.47 (22.12 to 46.82) | 52.30 (44.10 to 60.50) | |
Data in this table are the average and its 95% CI of one representative experiment. Results from other experiments were similar. Expression data are presented relative to that of HMBS, HPRT1, and GUSB. Fourteen candidate genes were selected, including genes that are more specific for cells of hematopoietic origin (CD44 and CD45); epithelial cell–specific genes such as those encoding cytokeratins, EpCAM, and mucin 1; genes encoding markers specific for the breast cancer subgroups (ESR1, ERBB1, ERBB2, CAV1, and CD24); and genes for two well-known EMT markers (TWIST1 and VIM). Data of the individual cell lines are presented in Supplementary Table 3 (available online), and the gene expression assays used are shown in Supplementary Table 1 (available online). To validate the gene expression profiling data, transcript levels of candidate genes that might enable discrimination among the four breast cancer subtypes, as represented by 19 randomly selected breast cancer cell lines, were analyzed with Affymetrix GeneChip Exon 1.0 ST Arrays (Affymetrix UK Ltd., Wickham la Wooburn Grn, UK) and real-time RT-PCR and compared with levels measured in whole blood of healthy blood donors before (n = 6) or after (n = 23) EpCAM-based CellSearch enrichment for circulating tumor cells. RNA was isolated from healthy blood and cell lines with the RNeasy (Micro) kit (Qiagen BV, Venlo, the Netherlands). For the cell lines, cDNA was prepared by use of the Superscript II RNase H-kit from Invitrogen (Breda, the Netherlands). For healthy blood donors before CellSearch enrichment and the preparations from healthy blood donors and cell lines after CellSearch enrichment, cDNA was synthesized with the RevertAid H Minus First Strand cDNA synthesis kit (Fermentas, St Leon-Rot, Germany), followed by a linear preamplification for the non-[2-[N-(3-dimethylaminopropyl)-N-propylamino]-4-[2,3-dihydro-3-methyl-(benzo-1,3-thiazol-2-yl)-methylidene]-1-phenyl-quinolinium] (SYBR Green I)-based assays (TaqMan PreAmp from Applied Biosystems, Nieuwerkerk a/d IJssel, the Netherlands), according to the manufacturer’s instructions. The resulting cDNA preparations were analyzed by real-time PCR with TaqMan gene expression assays and TaqMan Universal PCR Master Mix No AmpErase UNG (Applied Biosystems) and Absolute qPCR SYBR Green I mixture (Abgene, Epsom, UK) for the SYBR-based assays. PCRs were performed in a 20-μL reaction volume in an Mx3000P Real-Time PCR system (Stratagene, Amsterdam, the Netherlands). Expression of HMBS, HPRT1, and GUSB was used as a reference to control sample loading and RNA quality, as described previously (26). To enable comparison between the different methods of measuring gene expression (Affymetrix GeneChip Exon 1.0 ST arrays and real-time RT-PCR), data were normalized by expression levels that were measured by both methods in a set of seven control cell lines (ie, MDA-MB-435s, MDA-MB-231, CAMA-1, MCF-7, T47D, SK-BR-3, and EVSA-T). EGF = epidermal growth factor receptor; EMA = epithelial membrane antigen; EpCAM = epithelial cell adhesion molecule; EMT = epithelial–mesenchymal transition; CI = confidence interval; RT-PCR = reverse transcriptase–polymerase chain reaction; cDNA = complementary DNA.
One-way analysis of variance was used to test for differences between the four subgroups present in the cell lines, with P < .05 being considered statistically significant. All statistical tests were two-sided.
Immunological assessment of antigens in breast cancer cell lines with different intrinsic subtype characteristics and circulating tumor cell recovery*
| Flow cytometry, | CellSearch, | |||||
| Intrinsic subtype | No. of cell lines | CD45 | CD24 | CD44 | EpCAM | |
| Normal-like | 6 | <5 | <5 | >1000 | <5 | 2 (0 to 6) |
| Basal-like | 5 | <5 | 5–20 | 200–1000 | 20–200 | 48 (36 to 61) |
| Luminal | 5 | <5 | 5–20 | 5–20 | 20–200 | 75 (62 to 89) |
| HER2-positive | 3 | <5 | 5–20 | <5 | 20–200 | 85 (61 to 108) |
MFI = mean fluorescence intensity; EpCAM = epithelial cell adhesion molecule; CI = confidence interval; 7AAD = 7-amino-actinomycin D; FITC = fluorescein isothiocyanate.
Cultured human breast cancer cell lines were incubated with the following fluorochrome-conjugated monoclonal antibodies: EpCAM conjugated with FITC (clone EBA-1; BD Biosciences, San Jose, CA), CD24 conjugated with FITC (clone SN3; eBioscience, Inc., San Diego, CA), CD44 conjugated with R-phycoerythrin coupled to the cyanine dye Cy7 (PE-Cy7, clone HIB19; eBioscience), and CD45 conjugated with allophycocyanin (clone 2D1; BD Biosciences). We used 7AAD (Sigma-Aldrich, St Louis, MO; 1 μg/mL) to control for viability. Cells were then analyzed on a Canto flow cytometer (BD Biosciences). To exclude nonviable cells from analysis, only 7AAD-negative (viable) cells were evaluated for antigen expression. Unstained cells were used as a negative control. Only cells that expressed EpCAM were captured by the anti-EpCAM antibody present in the CellSearch circulating tumor cell profile kit. In addition, as shown in Figure 1 and Supplementary Table 2 (available online), MDA-MB-231 cells with marginal EpCAM expression were only partially (10 of 82 added tumor cells, or approximately 12%) captured by the CellSearch antibody, indicating that anti-EpCAM antibodies from the EBA-1 clone (BD Biosciences) and from the CellSearch circulating tumor cell kit have similar sensitivities and specificities.
Data are the average (95% CI) of one representative experiment performed in duplicate for the given number of cell lines. Blood samples containing EDTA (7.5-mL aliquots of blood) from a single healthy blood donor were obtained from CellSave Preservative Tubes (Veridex LCC, San Diego, CA). To each sample, 20 μL of a cell suspension containing 50–150 cultured cells from the indicated subtype of human breast cancer was added. To determine the actual viable cell number, a 100-μL aliquot of the cultured cells was incubated with 10 μL of 7AAD (1 μg/mL) and 100 μL of fluorescent beads (Beckman–Coulter, Inc., Miami, FL). After a 15-minute incubation at room temperature, 2 mL of phosphate-buffered saline was added, and samples were analyzed on a Calibur flow cytometer (BD Biosciences). At least 10 000 beads were acquired to estimate the number of 7AAD-negative (viable) cells. The efficiency of retrieving the tumor cells was controlled by counting the exact number of viable cells that were drawn in triplicate by flow cytometry and by light microscopy after serial dilution. To establish the number of circulating tumor cells recovered, samples were processed on the CellTrack AutoPrep analyzer (Veridex LLC) with the CellSearch circulating tumor cell profile kit (Veridex LLC), which uses microscopic iron particles coupled to anti-EpCAM to enrich for circulating tumor cells. The number of circulating tumor cells (ie, cells stained with the nuclear dye, 4′,6-diamidino-2-phenylindole, that are positive for cytokeratin 8, 18, and 19, and negative for CD45) were determined on the CellSpotter analyzer (Veridex LLC), according to the manufacturer's instructions (for full flow cytometry and CellSearch recovery data on these 19 cell lines, see Supplementary Table 2, available online).
One-way analysis of variance was used to test for differences between the four subgroups present in the cell lines, with P < .05 from a post hoc Dunett t test being considered statistically significant. All statistical tests were two-sided.
Figure 1Immunological assessment of antigens in breast cancer cell lines representing the four intrinsic breast cancer subtypes. Data from two normal-like breast cancer cell lines, one basal-like cell line, one luminal cell line, and one HER2 (ERBB2)-positive cell line are shown. Cell surface antigens on tumor cells were assessed individually by incubating 106 cultured human breast cancer cells with the following fluorochrome-conjugated monoclonal antibodies: anti-EpCAM conjugated with FITC (clone EBA-1; BD Biosciences, San Jose, CA), anti-CD24 conjugated with FITC (clone SN3; eBioscience, Inc., San Diego, CA), or anti-CD44 conjugated with R-phycoerythrin coupled to the cyanine dye Cy7 (PE-Cy7, clone HIB19; eBioscience). We used 7AAD (Sigma-Aldrich, St Louis, MO) to assess viability. Only viable (7AAD negative) cells were analyzed for antigen expression (red histograms). Unstained cells (black histograms) were used as a negative control. Data are from one representative experiment that was performed three times. Results were similar for all three experiments. EpCAM = epithelial cell adhesion molecule; FITC = fluorescein isothiocyanate; 7AAD = 7-amino-actinomycin D.