Literature DB >> 19112552

Identification and characterization of a new coleviroid (CbVd-5).

Wan-Ying Hou1, Teruo Sano, Feng Li, Zu-Jian Wu, Li Li, Shi-Fang Li.   

Abstract

A viroid-like RNA was detected from coleus (Coleus blumei) in China. It consisted of 274 nucleotides and had 66% sequence identity with a member of the closest known viroid species. The predicted secondary structure is rod-shaped with extensive base pairing, and it has the conserved region characteristic of the genus Coleviroid. Two terminal sequences that are highly conserved among some members of the genus were also identified. The viroid-like RNA was successfully transmitted to coleus by slash-inoculation. This viroid was identified as a new member of the genus Coleviroid, and we tentatively propose the name Coleus blumei viroid 5 (CbVd-5).

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Year:  2008        PMID: 19112552     DOI: 10.1007/s00705-008-0276-6

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  7 in total

Review 1.  What has been happening with viroids?

Authors:  Peter Palukaitis
Journal:  Virus Genes       Date:  2014-08-28       Impact factor: 2.332

2.  Detection of Viroids by RT-PCR.

Authors:  Nerida J Donovan; Grant A Chambers; Mengji Cao
Journal:  Methods Mol Biol       Date:  2022

3.  Discovery of replicating circular RNAs by RNA-seq and computational algorithms.

Authors:  Zhixiang Zhang; Shuishui Qi; Nan Tang; Xinxin Zhang; Shanshan Chen; Pengfei Zhu; Lin Ma; Jinping Cheng; Yun Xu; Meiguang Lu; Hongqing Wang; Shou-Wei Ding; Shifang Li; Qingfa Wu
Journal:  PLoS Pathog       Date:  2014-12-11       Impact factor: 6.823

4.  High-Throughput Sequencing Analysis of Small RNAs Derived from Coleus Blumei Viroids.

Authors:  Dong-Mei Jiang; Meng Wang; Shi-Fang Li; Zhi-Xiang Zhang
Journal:  Viruses       Date:  2019-07-05       Impact factor: 5.048

Review 5.  A scenario for the emergence of protoviroids in the RNA world and for their further evolution into viroids and viroid-like RNAs by modular recombinations and mutations.

Authors:  Ricardo Flores; Beatriz Navarro; Pedro Serra; Francesco Di Serio
Journal:  Virus Evol       Date:  2022-01-15

6.  Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae.

Authors:  Tamara Giguère; Charith Raj Adkar-Purushothama; Jean-Pierre Perreault
Journal:  PLoS One       Date:  2014-06-04       Impact factor: 3.240

7.  Reassessing species demarcation criteria in viroid taxonomy by pairwise identity matrices.

Authors:  Michela Chiumenti; Beatriz Navarro; Thierry Candresse; Ricardo Flores; Francesco Di Serio
Journal:  Virus Evol       Date:  2021-01-25
  7 in total

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