Literature DB >> 19111176

In vitro assays of 5' to 3'-exoribonuclease activity.

Olivier Pellegrini1, Nathalie Mathy, Ciarán Condon, Lionel Bénard.   

Abstract

The major cytoplasmic 5' to 3'-exoribonuclease activity is carried out by the Xrn1 protein in eukaryotic cells. A number of different approaches can be used to study multifunctional Xrn1 protein activity in vitro. In this chapter, we concentrate on methods used in our laboratory to analyze Xrn1 5' to 3'-exoribonuclease activity. Some of these techniques may also be suitable for detecting 3' to 5'-exoribonuclease or endoribonuclease activity. For these reasons, these assays can be used to isolate new proteins with ribonuclease activity and, when performed in combination with in vivo experiments, will contribute to a new level of understanding of the function of these factors.

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Year:  2008        PMID: 19111176     DOI: 10.1016/S0076-6879(08)02609-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  9 in total

1.  Real-time fluorescence detection of exoribonucleases.

Authors:  Flore Sinturel; Olivier Pellegrini; Song Xiang; Liang Tong; Ciarán Condon; Lionel Bénard
Journal:  RNA       Date:  2009-09-18       Impact factor: 4.942

2.  Coupled 5' nucleotide recognition and processivity in Xrn1-mediated mRNA decay.

Authors:  Martin Jinek; Scott M Coyle; Jennifer A Doudna
Journal:  Mol Cell       Date:  2011-03-04       Impact factor: 17.970

3.  Activation of the antiviral factor RNase L triggers translation of non-coding mRNA sequences.

Authors:  Agnes Karasik; Grant D Jones; Andrew V DePass; Nicholas R Guydosh
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

4.  Yeast double-stranded RNA virus L-A deliberately synthesizes RNA transcripts with 5'-diphosphate.

Authors:  Tsutomu Fujimura; Rosa Esteban
Journal:  J Biol Chem       Date:  2010-05-28       Impact factor: 5.157

5.  The catalytic efficiency of yeast ribonuclease III depends on substrate specific product release rate.

Authors:  Marc-Andre Comeau; Daniel A Lafontaine; Sherif Abou Elela
Journal:  Nucleic Acids Res       Date:  2016-06-01       Impact factor: 16.971

6.  Transcriptome wide annotation of eukaryotic RNase III reactivity and degradation signals.

Authors:  Jules Gagnon; Mathieu Lavoie; Mathieu Catala; Francis Malenfant; Sherif Abou Elela
Journal:  PLoS Genet       Date:  2015-02-13       Impact factor: 5.917

7.  A low-complexity region in human XRN1 directly recruits deadenylation and decapping factors in 5'-3' messenger RNA decay.

Authors:  Chung-Te Chang; Sowndarya Muthukumar; Ramona Weber; Yevgen Levdansky; Ying Chen; Dipankar Bhandari; Catia Igreja; Lara Wohlbold; Eugene Valkov; Elisa Izaurralde
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

8.  NUDT2 initiates viral RNA degradation by removal of 5'-phosphates.

Authors:  Beatrice T Laudenbach; Karsten Krey; Quirin Emslander; Line Lykke Andersen; Alexander Reim; Pietro Scaturro; Sarah Mundigl; Christopher Dächert; Katrin Manske; Markus Moser; Janos Ludwig; Dirk Wohlleber; Andrea Kröger; Marco Binder; Andreas Pichlmair
Journal:  Nat Commun       Date:  2021-11-25       Impact factor: 14.919

9.  Processing of RNA Containing 8-Oxo-7,8-Dihydroguanosine (8-oxoG) by the Exoribonuclease Xrn-1.

Authors:  Cheyenne N Phillips; Shawn Schowe; Conner J Langeberg; Namoos Siddique; Erich G Chapman; Marino J E Resendiz
Journal:  Front Mol Biosci       Date:  2021-11-15
  9 in total

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