Literature DB >> 19106630

Transcriptional control of microRNA expression in C. elegans: promoting better understanding.

Michael J Turner1, Frank J Slack.   

Abstract

Transcriptional regulation of microRNA (miRNA) expression is one of the least understood aspects of miRNA biogenesis. In C. elegans the list of miRNAs whose transcriptional control has been described in some detail is currently limited to four: let-7, lin-4, lsy-6, and mir-61. Each of these genes has been shown experimentally to be transcriptionaly regulated by cis- and/or trans-acting factors that either promote or inhibit expression. Additionally, computational methods based on conservation among miRNA genes have yielded predicted regulatory sequences in C. elegans that may function to regulate miRNA expression on a genome-wide scale.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19106630      PMCID: PMC4311750          DOI: 10.4161/rna.6.1.7574

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  38 in total

Review 1.  Transcription by RNA polymerase II: initiator-directed formation of transcription-competent complexes.

Authors:  L Weis; D Reinberg
Journal:  FASEB J       Date:  1992-11       Impact factor: 5.191

2.  MicroRNA genes are transcribed by RNA polymerase II.

Authors:  Yoontae Lee; Minju Kim; Jinju Han; Kyu-Hyun Yeom; Sanghyuk Lee; Sung Hee Baek; V Narry Kim
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

3.  Post-embryonic expression of C. elegans microRNAs belonging to the lin-4 and let-7 families in the hypodermis and the reproductive system.

Authors:  A Esquela-Kerscher; S M Johnson; L Bai; K Saito; J Partridge; K L Reinert; F J Slack
Journal:  Dev Dyn       Date:  2005-12       Impact factor: 3.780

4.  A novel C. elegans zinc finger transcription factor, lsy-2, required for the cell type-specific expression of the lsy-6 microRNA.

Authors:  Robert J Johnston; Oliver Hobert
Journal:  Development       Date:  2005-11-16       Impact factor: 6.868

5.  The SV40 early region TATA box is required for accurate in vitro initiation of transcription.

Authors:  D J Mathis; P Chambon
Journal:  Nature       Date:  1981-03-26       Impact factor: 49.962

Review 6.  Regulatory targets in the RNA polymerase II holoenzyme.

Authors:  J D Parvin; R A Young
Journal:  Curr Opin Genet Dev       Date:  1998-10       Impact factor: 5.578

7.  A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment.

Authors:  Agnieszka Rybak; Heiko Fuchs; Lena Smirnova; Christine Brandt; Elena E Pohl; Robert Nitsch; F Gregory Wulczyn
Journal:  Nat Cell Biol       Date:  2008-07-06       Impact factor: 28.824

Review 8.  The let-7 family of microRNAs.

Authors:  Sarah Roush; Frank J Slack
Journal:  Trends Cell Biol       Date:  2008-09-04       Impact factor: 20.808

9.  Characterization and identification of microRNA core promoters in four model species.

Authors:  Xuefeng Zhou; Jianhua Ruan; Guandong Wang; Weixiong Zhang
Journal:  PLoS Comput Biol       Date:  2007-01-09       Impact factor: 4.475

10.  Selective blockade of microRNA processing by Lin28.

Authors:  Srinivas R Viswanathan; George Q Daley; Richard I Gregory
Journal:  Science       Date:  2008-02-21       Impact factor: 47.728

View more
  13 in total

Review 1.  The widespread regulation of microRNA biogenesis, function and decay.

Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

2.  A feedback circuit involving let-7-family miRNAs and DAF-12 integrates environmental signals and developmental timing in Caenorhabditis elegans.

Authors:  Christopher M Hammell; Xantha Karp; Victor Ambros
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-14       Impact factor: 11.205

3.  Describing a Transcription Factor Dependent Regulation of the MicroRNA Transcriptome.

Authors:  Uri Rozovski; Inbal Hazan-Halevy; George Calin; David Harris; Ping Li; Zhiming Liu; Michael J Keating; Zeev Estrov
Journal:  J Vis Exp       Date:  2016-06-15       Impact factor: 1.355

Review 4.  miRNAs give worms the time of their lives: small RNAs and temporal control in Caenorhabditis elegans.

Authors:  Tamar D Resnick; Katherine A McCulloch; Ann E Rougvie
Journal:  Dev Dyn       Date:  2010-05       Impact factor: 3.780

5.  Toward a unified model of developmental timing: A "molting" approach.

Authors:  Gabriela C Monsalve; Alison R Frand
Journal:  Worm       Date:  2012-10-01

6.  Stress alters rates and types of loss of heterozygosity in Candida albicans.

Authors:  A Forche; D Abbey; T Pisithkul; M A Weinzierl; T Ringstrom; D Bruck; K Petersen; J Berman
Journal:  MBio       Date:  2011-07-26       Impact factor: 7.867

7.  Transcription factor binding sites are highly enriched within microRNA precursor sequences.

Authors:  Jittima Piriyapongsa; I King Jordan; Andrew B Conley; Tom Ronan; Neil R Smalheiser
Journal:  Biol Direct       Date:  2011-12-02       Impact factor: 4.540

8.  Role of miRNAs in CD4 T cell plasticity during inflammation and tolerance.

Authors:  Apoorva Sethi; Neeraja Kulkarni; Sandip Sonar; Girdhari Lal
Journal:  Front Genet       Date:  2013-01-31       Impact factor: 4.599

9.  Hormone-dependent activation and repression of microRNAs by the ecdysone receptor in the dengue vector mosquito Aedes aegypti.

Authors:  Ya-Zhou He; Emre Aksoy; Yike Ding; Alexander S Raikhel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-29       Impact factor: 12.779

10.  Understanding cooperativity of microRNAs via microRNA association networks.

Authors:  Young-Ji Na; Ju Han Kim
Journal:  BMC Genomics       Date:  2013-10-16       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.