Literature DB >> 19101924

An introduction to epitope prediction methods and software.

Xingdong Yang1, Xinglong Yu.   

Abstract

In this paper, current prediction methods and algorithms for both T- and B cell epitopes are reviewed, and a comprehensive summary of epitope prediction software and databases currently available online is also provided. This review can offer researchers in this field a sense of direction and insights for future work. However, our main purpose is to introduce clinical and basic biomedical researchers who are not familiar with these biological analysis tools and databases to these online resources and to provide guidance on how to use them effectively. Copyright (c) 2008 John Wiley & Sons, Ltd.

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Year:  2009        PMID: 19101924     DOI: 10.1002/rmv.602

Source DB:  PubMed          Journal:  Rev Med Virol        ISSN: 1052-9276            Impact factor:   6.989


  61 in total

1.  Epitope mapping in cell surface proteins by site-directed masking: defining the structural elements of NTPDase3 inhibition by a monoclonal antibody.

Authors:  Vasily V Ivanenkov; Patrick A Crawford; Aimi Toyama; Jean Sévigny; Terence L Kirley
Journal:  Protein Eng Des Sel       Date:  2010-05-27       Impact factor: 1.650

2.  Computational design, functional analysis and antigenic epitope estimation of a novel hybrid of 12 peptides of hirudin and reteplase.

Authors:  Yingting Cai; Jingxiao Bao; Xingzhen Lao; Heng Zheng; Jianhua Chen; Rong Yu
Journal:  J Mol Model       Date:  2015-08-13       Impact factor: 1.810

3.  A gel-free proteomic analysis of Taenia solium and Taenia crassiceps cysticerci vesicular extracts.

Authors:  Giovani Carlo Veríssimo da Costa; Regina Helena Saramago Peralta; Dário Eluan Kalume; Ana Larissa Gama Martins Alves; José Mauro Peralta
Journal:  Parasitol Res       Date:  2018-09-13       Impact factor: 2.289

4.  Prediction of epitopes using neural network based methods.

Authors:  Claus Lundegaard; Ole Lund; Morten Nielsen
Journal:  J Immunol Methods       Date:  2010-10-31       Impact factor: 2.303

Review 5.  Antibody specific epitope prediction-emergence of a new paradigm.

Authors:  Inbal Sela-Culang; Yanay Ofran; Bjoern Peters
Journal:  Curr Opin Virol       Date:  2015-03-31       Impact factor: 7.090

6.  Designing of an epitope-based peptide vaccine against walking pneumonia: an immunoinformatics approach.

Authors:  P Ambili Unni; A M Mohamed Thoufic Ali; Madhusmita Rout; A Thabitha; S Vino; S Sajitha Lulu
Journal:  Mol Biol Rep       Date:  2018-11-21       Impact factor: 2.316

7.  Concept and application of a computational vaccinology workflow.

Authors:  Johannes Söllner; Andreas Heinzel; Georg Summer; Raul Fechete; Laszlo Stipkovits; Susan Szathmary; Bernd Mayer
Journal:  Immunome Res       Date:  2010-11-03

8.  Models of RNA virus evolution and their roles in vaccine design.

Authors:  Samuel Ojosnegros; Niko Beerenwinkel
Journal:  Immunome Res       Date:  2010-11-03

9.  EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results.

Authors:  Shide Liang; Dandan Zheng; Daron M Standley; Bo Yao; Martin Zacharias; Chi Zhang
Journal:  BMC Bioinformatics       Date:  2010-07-16       Impact factor: 3.169

10.  A DNA vaccine encoding multiple HIV CD4 epitopes elicits vigorous polyfunctional, long-lived CD4+ and CD8+ T cell responses.

Authors:  Daniela Santoro Rosa; Susan Pereira Ribeiro; Rafael Ribeiro Almeida; Eliane Conti Mairena; Edilberto Postól; Jorge Kalil; Edecio Cunha-Neto
Journal:  PLoS One       Date:  2011-02-11       Impact factor: 3.240

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