Literature DB >> 19091875

Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis.

Robert Jeffrey Schmitz1, Yosuke Tamada, Mark Robert Doyle, Xiaoyu Zhang, Richard Mark Amasino.   

Abstract

The spectrum of histone modifications at a given locus is a critical determinant for the correct output of gene expression. In Arabidopsis (Arabidopsis thaliana), many studies have examined the relationship between histone methylation and gene expression, but few studies exist on the relationship between other covalent histone modifications and gene expression. In this work, we describe the role of histone H2B deubiquitination in the activation of gene expression and the consequence of a perturbation of histone H2B deubiquitination in the timing of the floral transition in Arabidopsis. A mutation in a H2B deubiquitinase, UBIQUITIN-SPECIFIC PROTEASE26 (UBP26), results in an early-flowering phenotype. In the ubp26 mutant, mRNA levels of the floral repressor FLOWERING LOCUS C (FLC) and other related family members is decreased. Furthermore, this mutant accumulates H2B monoubiquitination, and has decreased levels of H3K36 trimethylation and increased levels of H3K27 trimethylation at the FLC locus. Thus, UBP26 is required for transcriptional activation of FLC through H2B deubiquitination and is consistent with a model in which deubiquitination is necessary for the accumulation of H3K36 trimethylation and the proper level of transcriptional activation.

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Year:  2008        PMID: 19091875      PMCID: PMC2633843          DOI: 10.1104/pp.108.131508

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  58 in total

1.  Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

Authors:  U Johanson; J West; C Lister; S Michaels; R Amasino; C Dean
Journal:  Science       Date:  2000-10-13       Impact factor: 47.728

2.  SUPPRESSOR OF FRIGIDA3 encodes a nuclear ACTIN-RELATED PROTEIN6 required for floral repression in Arabidopsis.

Authors:  Kyuha Choi; Sanghee Kim; Sang Yeol Kim; Minsoo Kim; Youbong Hyun; Horim Lee; Sunghwa Choe; Sang-Gu Kim; Scott Michaels; Ilha Lee
Journal:  Plant Cell       Date:  2005-09-09       Impact factor: 11.277

3.  Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.

Authors:  Jung-Shin Lee; Abhijit Shukla; Jessica Schneider; Selene K Swanson; Michael P Washburn; Laurence Florens; Sukesh R Bhaumik; Ali Shilatifard
Journal:  Cell       Date:  2007-12-14       Impact factor: 41.582

4.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

Authors:  Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael P Washburn; Jerry L Workman
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

Review 5.  Vernalization: a model for investigating epigenetics and eukaryotic gene regulation in plants.

Authors:  Robert J Schmitz; Richard M Amasino
Journal:  Biochim Biophys Acta       Date:  2007-02-27

6.  SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C.

Authors:  Sanghee Kim; Kyuha Choi; Chulmin Park; Hyun-Ju Hwang; Ilha Lee
Journal:  Plant Cell       Date:  2006-11-30       Impact factor: 11.277

7.  The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation.

Authors:  C C Sheldon; J E Burn; P P Perez; J Metzger; J A Edwards; W J Peacock; E S Dennis
Journal:  Plant Cell       Date:  1999-03       Impact factor: 11.277

8.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

9.  EARLY IN SHORT DAYS 1 (ESD1) encodes ACTIN-RELATED PROTEIN 6 (AtARP6), a putative component of chromatin remodelling complexes that positively regulates FLC accumulation in Arabidopsis.

Authors:  Mar Martin-Trillo; Ana Lázaro; R Scott Poethig; Concepción Gómez-Mena; Manuel A Piñeiro; Jose M Martinez-Zapater; Jose A Jarillo
Journal:  Development       Date:  2006-02-22       Impact factor: 6.868

10.  Genic and global functions for Paf1C in chromatin modification and gene expression in Arabidopsis.

Authors:  Sookyung Oh; Sunchung Park; Steven van Nocker
Journal:  PLoS Genet       Date:  2008-08-22       Impact factor: 5.917

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  42 in total

1.  Co-adaptation of seed dormancy and flowering time in the arable weed Capsella bursa-pastoris (shepherd's purse).

Authors:  Peter E Toorop; Rafael Campos Cuerva; Graham S Begg; Bruna Locardi; Geoff R Squire; Pietro P M Iannetta
Journal:  Ann Bot       Date:  2011-12-05       Impact factor: 4.357

2.  The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization.

Authors:  Anthi Katsiarimpa; Franziska Anzenberger; Nicole Schlager; Susanne Neubert; Marie-Theres Hauser; Claus Schwechheimer; Erika Isono
Journal:  Plant Cell       Date:  2011-08-02       Impact factor: 11.277

Review 3.  Flickin' the ubiquitin switch: the role of H2B ubiquitylation in development.

Authors:  Duncan Edward Wright; Chen-Yi Wang; Cheng-Fu Kao
Journal:  Epigenetics       Date:  2011-10-01       Impact factor: 4.528

4.  Histone H2B monoubiquitination is involved in regulating the dynamics of microtubules during the defense response to Verticillium dahliae toxins in Arabidopsis.

Authors:  Min Hu; Bao-Lei Pei; Li-Fan Zhang; Ying-Zhang Li
Journal:  Plant Physiol       Date:  2014-02-24       Impact factor: 8.340

Review 5.  H2B ubiquitination: Conserved molecular mechanism, diverse physiologic functions of the E3 ligase during meiosis.

Authors:  Liying Wang; Chunwei Cao; Fang Wang; Jianguo Zhao; Wei Li
Journal:  Nucleus       Date:  2017-06-19       Impact factor: 4.197

6.  Histone 2B monoubiquitination complex integrates transcript elongation with RNA processing at circadian clock and flowering regulators.

Authors:  Magdalena Woloszynska; Sabine Le Gall; Pia Neyt; Tommaso M Boccardi; Marion Grasser; Gernot Längst; Stijn Aesaert; Griet Coussens; Stijn Dhondt; Eveline Van De Slijke; Leonardo Bruno; Jorge Fung-Uceda; Paloma Mas; Marc Van Montagu; Dirk Inzé; Kristiina Himanen; Geert De Jaeger; Klaus D Grasser; Mieke Van Lijsebettens
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-28       Impact factor: 11.205

7.  Arabidopsis trithorax-related3/SET domain GROUP2 is required for the winter-annual habit of Arabidopsis thaliana.

Authors:  Jae-Young Yun; Yosuke Tamada; Ye Eun Kang; Richard M Amasino
Journal:  Plant Cell Physiol       Date:  2012-02-28       Impact factor: 4.927

Review 8.  The ubiquitin system affects agronomic plant traits.

Authors:  Katrina J Linden; Judy Callis
Journal:  J Biol Chem       Date:  2020-08-12       Impact factor: 5.157

9.  Activation of gene expression by histone deubiquitinase OTLD1.

Authors:  Ido Keren; Vitaly Citovsky
Journal:  Epigenetics       Date:  2017-07-13       Impact factor: 4.528

10.  E3 ubiquitin ligase SP1 regulates peroxisome biogenesis in Arabidopsis.

Authors:  Ronghui Pan; John Satkovich; Jianping Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

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