Literature DB >> 19091783

Comparative glycoproteomics: approaches and applications.

Xin Wei1, Lingjun Li.   

Abstract

Glycosylation plays fundamental roles in controlling various biological processes. Therefore, glycosylation analysis has become an important target for proteomic research and has great potential for clinical applications. With the continuous development and refinement of glycoprotein isolation methods, increasing attention has been directed to the quantitative and comparative aspects. This review describes the mass spectrometry (MS)-based techniques for the comparative analysis of glycoproteins and their applications to answer a wide range of interesting biological questions.

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Year:  2008        PMID: 19091783      PMCID: PMC2673949          DOI: 10.1093/bfgp/eln053

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  56 in total

1.  Comprehensive identification of phosphorylation sites in postsynaptic density preparations.

Authors:  Jonathan C Trinidad; Christian G Specht; Agnes Thalhammer; Ralf Schoepfer; Alma L Burlingame
Journal:  Mol Cell Proteomics       Date:  2006-02-01       Impact factor: 5.911

2.  O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry.

Authors:  Keith Vosseller; Jonathan C Trinidad; Robert J Chalkley; Christian G Specht; Agnes Thalhammer; Aenoch J Lynn; June O Snedecor; Shenheng Guan; Katalin F Medzihradszky; David A Maltby; Ralf Schoepfer; Alma L Burlingame
Journal:  Mol Cell Proteomics       Date:  2006-02-01       Impact factor: 5.911

3.  Beta1,6-branched oligosaccharides are increased in lymph node metastases and predict poor outcome in breast carcinoma.

Authors:  Tamara Handerson; Robert Camp; Malini Harigopal; David Rimm; John Pawelek
Journal:  Clin Cancer Res       Date:  2005-04-15       Impact factor: 12.531

4.  Glycoproteomic survey of Mammillaria gracillis tissues grown in vitro.

Authors:  Biljana Balen; Marijana Krsnik-Rasol; Alina D Zamfir; Jadranka Milosević; Sergey Y Vakhrushev; Jasna Peter-Katalinić
Journal:  J Proteome Res       Date:  2006-07       Impact factor: 4.466

5.  Reelin expression and glycosylation patterns are altered in Alzheimer's disease.

Authors:  Arancha Botella-López; Ferran Burgaya; Rosalina Gavín; M Salud García-Ayllón; Estrella Gómez-Tortosa; Jordi Peña-Casanova; Jesús M Ureña; José A Del Río; Rafael Blesa; Eduardo Soriano; Javier Sáez-Valero
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-27       Impact factor: 11.205

6.  Comparative glycoproteomics of N-linked complex-type glycoforms containing sialic acid in human serum.

Authors:  Ruiqing Qiu; Fred E Regnier
Journal:  Anal Chem       Date:  2005-11-15       Impact factor: 6.986

7.  Proteomic analysis of serum associated fucosylated glycoproteins in the development of primary hepatocellular carcinoma.

Authors:  Mary Ann Comunale; Melissa Lowman; Ronald E Long; Jonathan Krakover; Ramila Philip; Steven Seeholzer; Alison A Evans; Hie-Won L Hann; Timothy M Block; Anand S Mehta
Journal:  J Proteome Res       Date:  2006-02       Impact factor: 4.466

8.  Fucosylated haptoglobin is a novel marker for pancreatic cancer: a detailed analysis of the oligosaccharide structure and a possible mechanism for fucosylation.

Authors:  Noriko Okuyama; Yoshihito Ide; Miyako Nakano; Tsutomu Nakagawa; Kanako Yamanaka; Kenta Moriwaki; Kohei Murata; Hiroaki Ohigashi; Shigekazu Yokoyama; Hidetoshi Eguchi; Osamu Ishikawa; Toshifumi Ito; Michio Kato; Akinori Kasahara; Sunao Kawano; Jianguo Gu; Naoyuki Taniguchi; Eiji Miyoshi
Journal:  Int J Cancer       Date:  2006-06-01       Impact factor: 7.396

9.  Use of targeted glycoproteomics to identify serum glycoproteins that correlate with liver cancer in woodchucks and humans.

Authors:  Timothy M Block; Mary Ann Comunale; Melissa Lowman; Laura F Steel; Patrick R Romano; Claus Fimmel; Bud C Tennant; W Thomas London; Alison A Evans; Baruch S Blumberg; Raymond A Dwek; Tajinder S Mattu; Anand S Mehta
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-10       Impact factor: 11.205

10.  Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol.

Authors:  Keith Vosseller; Kirk C Hansen; Robert J Chalkley; Jonathan C Trinidad; Lance Wells; Gerald W Hart; Alma L Burlingame
Journal:  Proteomics       Date:  2005-02       Impact factor: 3.984

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  16 in total

Review 1.  Recent progress in quantitative glycoproteomics.

Authors:  Ying Zhang; Hongrui Yin; Haojie Lu
Journal:  Glycoconj J       Date:  2012-06-15       Impact factor: 2.916

Review 2.  Mass spectrometry based glycoproteomics--from a proteomics perspective.

Authors:  Sheng Pan; Ru Chen; Ruedi Aebersold; Teresa A Brentnall
Journal:  Mol Cell Proteomics       Date:  2010-08-24       Impact factor: 5.911

3.  Artificial organelles: digital microfluidic platform for proteoglycan and glycoprotein biosynthesis.

Authors:  Jeffrey G Martin; Julie M Beaudet; Jonathan S Dordick; Robert J Linhardt
Journal:  ScientificWorldJournal       Date:  2010-06-01

4.  Mass Spectrometry-based Proteomics and Peptidomics for Systems Biology and Biomarker Discovery.

Authors:  Robert Cunningham; Di Ma; Lingjun Li
Journal:  Front Biol (Beijing)       Date:  2012-08-01

Review 5.  Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2009-2010.

Authors:  David J Harvey
Journal:  Mass Spectrom Rev       Date:  2014-05-26       Impact factor: 10.946

Review 6.  Algorithms and design strategies towards automated glycoproteomics analysis.

Authors:  Han Hu; Kshitij Khatri; Joseph Zaia
Journal:  Mass Spectrom Rev       Date:  2016-01-04       Impact factor: 10.946

7.  Characterization of murine brain membrane glycoproteins by detergent assisted lectin affinity chromatography.

Authors:  Xin Wei; Charles Dulberger; Lingjun Li
Journal:  Anal Chem       Date:  2010-08-01       Impact factor: 6.986

8.  A quantitative proteomic approach to prion disease biomarker research: delving into the glycoproteome.

Authors:  Xin Wei; Allen Herbst; Di Ma; Judd Aiken; Lingjun Li
Journal:  J Proteome Res       Date:  2011-04-25       Impact factor: 4.466

Review 9.  Glycosylation and other PTMs alterations in neurodegenerative diseases: Current status and future role in neurotrauma.

Authors:  Hussein Abou-Abbass; Hadi Abou-El-Hassan; Hisham Bahmad; Kazem Zibara; Abir Zebian; Rabab Youssef; Joy Ismail; Rui Zhu; Shiyue Zhou; Xue Dong; Mayse Nasser; Marwan Bahmad; Hala Darwish; Yehia Mechref; Firas Kobeissy
Journal:  Electrophoresis       Date:  2016-04-04       Impact factor: 3.535

Review 10.  Chemical Glycoproteomics.

Authors:  Krishnan K Palaniappan; Carolyn R Bertozzi
Journal:  Chem Rev       Date:  2016-11-18       Impact factor: 60.622

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