Literature DB >> 19082560

Phage proteomics: applications of mass spectrometry.

Rob Lavigne1, Pieter-Jan Ceyssens, J Robben.   

Abstract

Current techniques in mass spectrometry (MS) allow sensitive and accurate identification of proteins thanks to the in silico availability of these protein sequences within databases. This chapter provides a short overview of MS techniques used in the identification of phage structural proteins and focuses on an electron spray peptide ionization (ESI-MS/MS) approach to identify the phage structural proteome in a comprehensive and systematic ways. Such analyses provide an experimental examination of structural proteins and confirm genome-based gene predictions.

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Year:  2009        PMID: 19082560     DOI: 10.1007/978-1-60327-565-1_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

1.  Escherichia coli O157:H7 typing phage V7 is a T4-like virus.

Authors:  Andrew M Kropinski; Erika J Lingohr; Dianne M Moyles; Andrew Chibeu; Amanda Mazzocco; Kristyn Franklin; Andre Villegas; Rafiq Ahmed; Yi-Min She; Roger P Johnson
Journal:  J Virol       Date:  2012-09       Impact factor: 5.103

2.  Anti-CRISPR-Associated Proteins Are Crucial Repressors of Anti-CRISPR Transcription.

Authors:  Sabrina Y Stanley; Adair L Borges; Kuei-Ho Chen; Danielle L Swaney; Nevan J Krogan; Joseph Bondy-Denomy; Alan R Davidson
Journal:  Cell       Date:  2019-08-29       Impact factor: 41.582

3.  Genomes and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia.

Authors:  Jason J Gill; Elizabeth J Summer; William K Russell; Stephanie M Cologna; Thomas M Carlile; Alicia C Fuller; Kate Kitsopoulos; Leslie M Mebane; Brandi N Parkinson; David Sullivan; Lisa A Carmody; Carlos F Gonzalez; John J LiPuma; Ry Young
Journal:  J Bacteriol       Date:  2011-07-29       Impact factor: 3.490

4.  DeePVP: Identification and classification of phage virion proteins using deep learning.

Authors:  Zhencheng Fang; Tao Feng; Hongwei Zhou; Muxuan Chen
Journal:  Gigascience       Date:  2022-08-11       Impact factor: 7.658

5.  CIM(®) monolithic anion-exchange chromatography as a useful alternative to CsCl gradient purification of bacteriophage particles.

Authors:  Evelien M Adriaenssens; Susan M Lehman; Katrien Vandersteegen; Dieter Vandenheuvel; Didier L Philippe; Anneleen Cornelissen; Martha R J Clokie; Andrés J García; Maurice De Proft; Martine Maes; Rob Lavigne
Journal:  Virology       Date:  2012-10-16       Impact factor: 3.616

6.  Genome, Proteome and Structure of a T7-Like Bacteriophage of the Kiwifruit Canker Phytopathogen Pseudomonas syringae pv. actinidiae.

Authors:  Rebekah A Frampton; Elena Lopez Acedo; Vivienne L Young; Danni Chen; Brian Tong; Corinda Taylor; Richard A Easingwood; Andrew R Pitman; Torsten Kleffmann; Mihnea Bostina; Peter C Fineran
Journal:  Viruses       Date:  2015-06-24       Impact factor: 5.048

7.  Genome Analysis of Pseudomonas aeruginosa Bacteriophage KPP23, Belonging to the Family Siphoviridae.

Authors:  Kotoe Yamaguchi; Reina Miyata; Ryu Shigehisa; Jumpei Uchiyama; Iyo Takemura-Uchiyama; Shin-Ichiro Kato; Takako Ujihara; Yoshihiko Sakaguchi; Masanori Daibata; Shigenobu Matsuzaki
Journal:  Genome Announc       Date:  2014-05-22

Review 8.  Progress in lactic acid bacterial phage research.

Authors:  Jennifer Mahony; Francesca Bottacini; Douwe van Sinderen; Gerald F Fitzgerald
Journal:  Microb Cell Fact       Date:  2014-08-29       Impact factor: 5.328

9.  Naïve Bayes classifier with feature selection to identify phage virion proteins.

Authors:  Peng-Mian Feng; Hui Ding; Wei Chen; Hao Lin
Journal:  Comput Math Methods Med       Date:  2013-05-15       Impact factor: 2.238

10.  Incomplete LPS Core-Specific Felix01-Like Virus vB_EcoM_VpaE1.

Authors:  Eugenijus Šimoliūnas; Monika Vilkaitytė; Laura Kaliniene; Aurelija Zajančkauskaitė; Algirdas Kaupinis; Juozas Staniulis; Mindaugas Valius; Rolandas Meškys; Lidija Truncaitė
Journal:  Viruses       Date:  2015-11-27       Impact factor: 5.048

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