Literature DB >> 19081931

Asparagine beta-hydroxylation stabilizes the ankyrin repeat domain fold.

Leanne Kelly1, Michael A McDonough, Mathew L Coleman, Peter J Ratcliffe, Christopher J Schofield.   

Abstract

Ankyrin repeats (ARs) are one of the most common structural motifs among eukaryotic proteins. Recent analyses have shown that factor inhibiting hypoxia-inducible factor (FIH) catalyses the hydroxylation of highly conserved Asn-residues within ankyrin repeat domains (ARDs). However, the effect of Asn-hydroxylation on ARD structure is unknown. Supporting the proposal that FIH-mediated ARD hydroxylation is ubiquitous we report that consensus ARD proteins are FIH substrates both in vitro and in vivo. X-ray diffraction analyses revealed that hydroxylation does not alter the archetypical ARD conformation in the crystalline state. However, other biophysical analyses revealed that hydroxylation significantly stabilizes the ARD fold in solution. We propose that intracellular protein hydroxylation is much more common than previously thought and that one of its roles is stabilization of localized regions of ARD folds.

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Year:  2008        PMID: 19081931     DOI: 10.1039/b815271c

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  18 in total

1.  Factor inhibiting HIF (FIH) recognizes distinct molecular features within hypoxia-inducible factor-α (HIF-α) versus ankyrin repeat substrates.

Authors:  Sarah E Wilkins; Sarah Karttunen; Rachel J Hampton-Smith; Iain Murchland; Anne Chapman-Smith; Daniel J Peet
Journal:  J Biol Chem       Date:  2012-01-23       Impact factor: 5.157

2.  Ankyrin Repeat Proteins of Orf Virus Influence the Cellular Hypoxia Response Pathway.

Authors:  Da-Yuan Chen; Jacqueline-Alba Fabrizio; Sarah E Wilkins; Keyur A Dave; Jeffrey J Gorman; Jonathan M Gleadle; Stephen B Fleming; Daniel J Peet; Andrew A Mercer
Journal:  J Virol       Date:  2016-12-16       Impact factor: 5.103

Review 3.  Amazing Diversity in Biochemical Roles of Fe(II)/2-Oxoglutarate Oxygenases.

Authors:  Caitlyn Q Herr; Robert P Hausinger
Journal:  Trends Biochem Sci       Date:  2018-04-27       Impact factor: 13.807

4.  Biological regulation via ankyrin repeat folding.

Authors:  Doug Barrick
Journal:  ACS Chem Biol       Date:  2009-01-16       Impact factor: 5.100

5.  Hypoxia-dependent sequestration of an oxygen sensor by a widespread structural motif can shape the hypoxic response--a predictive kinetic model.

Authors:  Bernhard Schmierer; Béla Novák; Christopher J Schofield
Journal:  BMC Syst Biol       Date:  2010-10-18

6.  PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nepsilon-dimethyl lysine demethylase.

Authors:  Christoph Loenarz; Wei Ge; Mathew L Coleman; Nathan R Rose; Christopher D O Cooper; Robert J Klose; Peter J Ratcliffe; Christopher J Schofield
Journal:  Hum Mol Genet       Date:  2009-10-19       Impact factor: 6.150

7.  Factor-inhibiting hypoxia-inducible factor (FIH) catalyses the post-translational hydroxylation of histidinyl residues within ankyrin repeat domains.

Authors:  Ming Yang; Rasheduzzaman Chowdhury; Wei Ge; Refaat B Hamed; Michael A McDonough; Timothy D W Claridge; Benedikt M Kessler; Matthew E Cockman; Peter J Ratcliffe; Christopher J Schofield
Journal:  FEBS J       Date:  2011-02-23       Impact factor: 5.542

8.  Asparagine and aspartate hydroxylation of the cytoskeletal ankyrin family is catalyzed by factor-inhibiting hypoxia-inducible factor.

Authors:  Ming Yang; Wei Ge; Rasheduzzaman Chowdhury; Timothy D W Claridge; Holger B Kramer; Bernhard Schmierer; Michael A McDonough; Lingzhi Gong; Benedikt M Kessler; Peter J Ratcliffe; Mathew L Coleman; Christopher J Schofield
Journal:  J Biol Chem       Date:  2010-12-22       Impact factor: 5.157

9.  Proteomics-based identification of novel factor inhibiting hypoxia-inducible factor (FIH) substrates indicates widespread asparaginyl hydroxylation of ankyrin repeat domain-containing proteins.

Authors:  Matthew E Cockman; James D Webb; Holger B Kramer; Benedikt M Kessler; Peter J Ratcliffe
Journal:  Mol Cell Proteomics       Date:  2008-10-20       Impact factor: 5.911

10.  Nuclear entry and export of FIH are mediated by HIF1α and exportin1, respectively.

Authors:  Yihua Wang; Shan Zhong; Christopher J Schofield; Peter J Ratcliffe; Xin Lu
Journal:  J Cell Sci       Date:  2018-11-19       Impact factor: 5.285

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