Literature DB >> 19074292

Human Rad52-mediated homology search and annealing occurs by continuous interactions between overlapping nucleoprotein complexes.

Eli Rothenberg1, Jill M Grimme, Maria Spies, Taekjip Ha.   

Abstract

The Rad52 protein has critical functions in distinct pathways of the homology-directed DNA repair, one of which is to promote the annealing of complementary strands of DNA. Both yeast and human Rad52 proteins organize into ring-shaped oligomers with the predominant form being a heptamer. Despite the wealth of information obtained in previous investigations, how Rad52 mediates homology search and annealing remains unclear. Here, we developed single-molecule fluorescence resonance energy transfer approaches to probe hRad52-mediated DNA annealing events in real time. We found that annealing proceeds in successive steps involving rearrangements of the ssDNA-hRad52 complex. Moreover, after initial pairing, further search for extended homology occurs without dissociation. This search process is driven by an interaction between 2 overlapping nucleoprotein complexes. In light of these observations we propose a model for hRad52-mediated DNA annealing where ssDNA release and dsDNA zippering are coordinated through successive rearrangement of overlapping nucleoprotein complexes.

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Year:  2008        PMID: 19074292      PMCID: PMC2629295          DOI: 10.1073/pnas.0810317106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  A novel function of Rad54 protein. Stabilization of the Rad51 nucleoprotein filament.

Authors:  Alexander V Mazin; Andrei A Alexeev; Stephen C Kowalczykowski
Journal:  J Biol Chem       Date:  2003-02-03       Impact factor: 5.157

2.  Schizosaccharomyces pombe Rad22A and Rad22B have similar biochemical properties and form multimeric structures.

Authors:  Femke A T de Vries; José B M Zonneveld; Anton J de Groot; Roman I Koning; Albert A van Zeeland; Albert Pastink
Journal:  Mutat Res       Date:  2006-12-16       Impact factor: 2.433

3.  Positional stability of single double-strand breaks in mammalian cells.

Authors:  Evi Soutoglou; Jonas F Dorn; Kundan Sengupta; Maria Jasin; Andre Nussenzweig; Thomas Ried; Gaudenz Danuser; Tom Misteli
Journal:  Nat Cell Biol       Date:  2007-05-07       Impact factor: 28.824

4.  Precise binding of single-stranded DNA termini by human RAD52 protein.

Authors:  C A Parsons; P Baumann; E Van Dyck; S C West
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

5.  Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing.

Authors:  Francesca Storici; Joyce R Snipe; Godwin K Chan; Dmitry A Gordenin; Michael A Resnick
Journal:  Mol Cell Biol       Date:  2006-08-14       Impact factor: 4.272

6.  Identification of residues important for DNA binding in the full-length human Rad52 protein.

Authors:  Janice A Lloyd; Dharia A McGrew; Kendall L Knight
Journal:  J Mol Biol       Date:  2005-01-14       Impact factor: 5.469

7.  Visualisation of human rad52 protein and its complexes with hRad51 and DNA.

Authors:  E Van Dyck; N M Hajibagheri; A Stasiak; S C West
Journal:  J Mol Biol       Date:  1998-12-11       Impact factor: 5.469

8.  In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination.

Authors:  Neal Sugawara; Xuan Wang; James E Haber
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

9.  DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes.

Authors:  Ivan Rasnik; Sua Myong; Wei Cheng; Timothy M Lohman; Taekjip Ha
Journal:  J Mol Biol       Date:  2004-02-13       Impact factor: 5.469

10.  Capture of linear fragments at a double-strand break in yeast.

Authors:  Anat Haviv-Chesner; Yoshifumi Kobayashi; Abram Gabriel; Martin Kupiec
Journal:  Nucleic Acids Res       Date:  2007-08-01       Impact factor: 16.971

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  55 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

2.  Small-molecule inhibitors identify the RAD52-ssDNA interaction as critical for recovery from replication stress and for survival of BRCA2 deficient cells.

Authors:  Sarah R Hengel; Eva Malacaria; Laura Folly da Silva Constantino; Fletcher E Bain; Andrea Diaz; Brandon G Koch; Liping Yu; Meng Wu; Pietro Pichierri; M Ashley Spies; Maria Spies
Journal:  Elife       Date:  2016-07-19       Impact factor: 8.140

Review 3.  Mechanism of homologous recombination and implications for aging-related deletions in mitochondrial DNA.

Authors:  Xin Jie Chen
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

4.  Hybridization kinetics is different inside cells.

Authors:  Ingmar Schoen; Hubert Krammer; Dieter Braun
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

5.  Organization and dynamics of the nonhomologous end-joining machinery during DNA double-strand break repair.

Authors:  Dylan A Reid; Sarah Keegan; Alejandra Leo-Macias; Go Watanabe; Natasha T Strande; Howard H Chang; Betul Akgol Oksuz; David Fenyo; Michael R Lieber; Dale A Ramsden; Eli Rothenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

Review 6.  Mismatch repair during homologous and homeologous recombination.

Authors:  Maria Spies; Richard Fishel
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-03-02       Impact factor: 10.005

Review 7.  DNA repair mechanisms in dividing and non-dividing cells.

Authors:  Teruaki Iyama; David M Wilson
Journal:  DNA Repair (Amst)       Date:  2013-05-16

Review 8.  Homologous recombination and the repair of DNA double-strand breaks.

Authors:  William Douglass Wright; Shanaya Shital Shah; Wolf-Dietrich Heyer
Journal:  J Biol Chem       Date:  2018-03-29       Impact factor: 5.157

Review 9.  Regulation of Single-Strand Annealing and its Role in Genome Maintenance.

Authors:  Ragini Bhargava; David O Onyango; Jeremy M Stark
Journal:  Trends Genet       Date:  2016-07-19       Impact factor: 11.639

10.  Human Rad52 binds and wraps single-stranded DNA and mediates annealing via two hRad52-ssDNA complexes.

Authors:  Jill M Grimme; Masayoshi Honda; Rebecca Wright; Yusuke Okuno; Eli Rothenberg; Alexander V Mazin; Taekjip Ha; Maria Spies
Journal:  Nucleic Acids Res       Date:  2010-01-16       Impact factor: 16.971

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