Literature DB >> 19073865

Sequence-based identification of Aspergillus, fusarium, and mucorales species in the clinical mycology laboratory: where are we and where should we go from here?

S A Balajee1, A M Borman, M E Brandt, J Cano, M Cuenca-Estrella, E Dannaoui, J Guarro, G Haase, C C Kibbler, W Meyer, K O'Donnell, C A Petti, J L Rodriguez-Tudela, D Sutton, A Velegraki, B L Wickes.   

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Year:  2008        PMID： 19073865      PMCID： PMC2668331          DOI： 10.1128/JCM.01685-08

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


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  36 in total

Review 1.  Phylogenetic species recognition and species concepts in fungi.

Authors:  J W Taylor; D J Jacobson; S Kroken; T Kasuga; D M Geiser; D S Hibbett; M C Fisher
Journal:  Fungal Genet Biol       Date:  2000-10       Impact factor: 3.495

2.  Experience with the MicroSeq D2 large-subunit ribosomal DNA sequencing kit for identification of filamentous fungi encountered in the clinical laboratory.

Authors:  Leslie Hall; Sherri Wohlfiel; Glenn D Roberts
Journal:  J Clin Microbiol       Date:  2004-02       Impact factor: 5.948

3.  Polyphasic taxonomy of Aspergillus fumigatus and related species.

Authors:  Seung-Beom Hong; Seung-Joo Go; Hyeon-Dong Shin; Jens C Frisvad; Robert A Samson
Journal:  Mycologia       Date:  2005 Nov-Dec       Impact factor: 2.696

4.  DNA data. Proposal to 'Wikify' GenBank meets stiff resistance.

Authors:  Elizabeth Pennisi
Journal:  Science       Date:  2008-03-21       Impact factor: 47.728

5.  Mistaken identity: Neosartorya pseudofischeri and its anamorph masquerading as Aspergillus fumigatus.

Authors:  S Arunmozhi Balajee; Jennifer Gribskov; Mary Brandt; James Ito; Annette Fothergill; Kieren A Marr
Journal:  J Clin Microbiol       Date:  2005-12       Impact factor: 5.948

6.  Assessment of ribosomal large-subunit D1-D2, internal transcribed spacer 1, and internal transcribed spacer 2 regions as targets for molecular identification of medically important Aspergillus species.

Authors:  Hans P Hinrikson; Steven F Hurst; Timothy J Lott; David W Warnock; Christine J Morrison
Journal:  J Clin Microbiol       Date:  2005-05       Impact factor: 5.948

7.  Nonsporulating clinical isolate identified as Petromyces alliaceus (anamorph Aspergillus alliaceus) by morphological and sequence-based methods.

Authors:  S Arunmozhi Balajee; Mark D Lindsley; Naureen Iqbal; James Ito; Peter G Pappas; Mary E Brandt
Journal:  J Clin Microbiol       Date:  2007-05-30       Impact factor: 5.948

8.  Phylogenetic diversity and microsphere array-based genotyping of human pathogenic Fusaria, including isolates from the multistate contact lens-associated U.S. keratitis outbreaks of 2005 and 2006.

Authors:  Kerry O'Donnell; Brice A J Sarver; Mary Brandt; Douglas C Chang; Judith Noble-Wang; Benjamin J Park; Deanna A Sutton; Lynette Benjamin; Mark Lindsley; Arvind Padhye; David M Geiser; Todd J Ward
Journal:  J Clin Microbiol       Date:  2007-05-16       Impact factor: 5.948

9.  Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective.

Authors:  R Henrik Nilsson; Martin Ryberg; Erik Kristiansson; Kessy Abarenkov; Karl-Henrik Larsson; Urmas Kõljalg
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

10.  Aspergillus species identification in the clinical setting.

Authors:  S A Balajee; J Houbraken; P E Verweij; S-B Hong; T Yaghuchi; J Varga; R A Samson
Journal:  Stud Mycol       Date:  2007       Impact factor: 16.097
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  91 in total

1.  Molecular phylogeny and proposal of two new species of the emerging pathogenic fungus Saksenaea.

Authors:  E Alvarez; D Garcia-Hermoso; D A Sutton; J F Cano; A M Stchigel; D Hoinard; A W Fothergill; M G Rinaldi; F Dromer; J Guarro
Journal:  J Clin Microbiol       Date:  2010-10-06       Impact factor: 5.948

2.  Diagnosis of invasive aspergillosis by a commercial real-time PCR assay for Aspergillus DNA in bronchoalveolar lavage fluid samples from high-risk patients compared to a galactomannan enzyme immunoassay.

Authors:  Riccardo Torelli; Maurizio Sanguinetti; Adrian Moody; Livio Pagano; Morena Caira; Elena De Carolis; Leonello Fuso; Gennaro De Pascale; Giuseppe Bello; Massimo Antonelli; Giovanni Fadda; Brunella Posteraro
Journal:  J Clin Microbiol       Date:  2011-10-19       Impact factor: 5.948

3.  Use of matrix-assisted laser desorption ionization-time of flight mass spectrometry for caspofungin susceptibility testing of Candida and Aspergillus species.

Authors:  Elena De Carolis; Antonietta Vella; Ada R Florio; Patrizia Posteraro; David S Perlin; Maurizio Sanguinetti; Brunella Posteraro
Journal:  J Clin Microbiol       Date:  2012-04-25       Impact factor: 5.948

4.  Internet-accessible DNA sequence database for identifying fusaria from human and animal infections.

Authors:  Kerry O'Donnell; Deanna A Sutton; Michael G Rinaldi; Brice A J Sarver; S Arunmozhi Balajee; Hans-Josef Schroers; Richard C Summerbell; Vincent A R G Robert; Pedro W Crous; Ning Zhang; Takayuki Aoki; Kyongyong Jung; Jongsun Park; Yong-Hwan Lee; Seogchan Kang; Bongsoo Park; David M Geiser
Journal:  J Clin Microbiol       Date:  2010-08-04       Impact factor: 5.948

5.  An improved protocol for the preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA filter papers.

Authors:  Andrew M Borman; Mark Fraser; Christopher J Linton; Michael D Palmer; Elizabeth M Johnson
Journal:  Mycopathologia       Date:  2010-02-18       Impact factor: 2.574

6.  Systematic internal transcribed spacer sequence analysis for identification of clinical mold isolates in diagnostic mycology: a 5-year study.

Authors:  Diana E Ciardo; Katja Lucke; Alex Imhof; Guido V Bloemberg; Erik C Böttger
Journal:  J Clin Microbiol       Date:  2010-06-23       Impact factor: 5.948

7.  DNA barcoding in Mucorales: an inventory of biodiversity.

Authors:  G Walther; J Pawłowska; A Alastruey-Izquierdo; M Wrzosek; J L Rodriguez-Tudela; S Dolatabadi; A Chakrabarti; G S de Hoog
Journal:  Persoonia       Date:  2013-03-04       Impact factor: 11.051

8.  Genetic Diversity and In Vitro Antifungal Susceptibility of 200 Clinical and Environmental Aspergillus flavus Isolates.

Authors:  Mojtaba Taghizadeh-Armaki; Mohammad Taghi Hedayati; Saham Ansari; Saeed Mahdavi Omran; Sasan Saber; Haleh Rafati; Jan Zoll; Henrich A van der Lee; Willem J G Melchers; Paul E Verweij; Seyedmojtaba Seyedmousavi
Journal:  Antimicrob Agents Chemother       Date:  2017-04-24       Impact factor: 5.191

9.  In vitro combination of anidulafungin and voriconazole against intrinsically azole-susceptible and -resistant Aspergillus spp.

Authors:  Virginie Planche; Sebastien Ducroz; Alexandre Alanio; Marie-Elisabeth Bougnoux; Olivier Lortholary; Eric Dannaoui
Journal:  Antimicrob Agents Chemother       Date:  2012-05-21       Impact factor: 5.191

10.  Molecular Detection of Filamentous Fungi in Formalin-Fixed Paraffin-Embedded Specimens in Invasive Fungal Wound Infections Is Feasible with High Specificity.

Authors:  Anuradha Ganesan; Justin Wells; Faraz Shaikh; Philip Peterson; William Bradley; M Leigh Carson; Joseph L Petfield; Mary Klassen-Fischer; Kevin S Akers; Kevin Downing; Ralf Bialek; David R Tribble; Brian L Wickes
Journal:  J Clin Microbiol       Date:  2019-12-23       Impact factor: 5.948
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