Literature DB >> 19072291

Photolysis of adenosylcobalamin and radical pair recombination in ethanolamine ammonia-lyase probed on the micro- to millisecond time scale by using time-resolved optical absorption spectroscopy.

Wesley D Robertson1, Kurt Warncke.   

Abstract

The quantum yield and kinetics of decay of cob(II)alamin formed by pulsed-laser photolysis of adenosylcobalamin (AdoCbl; coenzyme B(12)) in AdoCbl-dependent ethanolamine ammonia-lyase (EAL) from Salmonella typhimurium have been studied on the 10(-7)-10(-1) s time scale at 295 K by using transient ultraviolet-visible absorption spectroscopy. The aim is to probe the mechanism of formation and stabilization of the cob(II)alamin-5'-deoxyadenosyl radical pair, which is a key intermediate in EAL catalysis, and the influence of substrate binding on this process. Substrate binding is required for cobalt-carbon bond cleavage in the native system. Photolysis of AdoCbl in EAL leads to a quantum yield at 10(-7) s for cob(II)alamin of 0.08 +/- 0.01, which is 3-fold smaller than for AdoCbl in aqueous solution (0.23 +/- 0.01). The protein binding site therefore suppresses photoproduct radical pair formation. Three photoproduct states, P(f), P(s), and P(c), are identified in holo-EAL by the different cob(II)alamin decay kinetics (subscripts denote fast, slow, and constant, respectively). These states have the following first-order decay rate constants and quantum yields: 2.2 x 10(3) s(-1) and 0.02 for P(f), 4.2 x 10(2) s(-1) and 0.01 for P(s), and constant amplitude, with no recombination, and 0.05 for P(c), respectively. Binding of the substrate analogue (S)-1-amino-2-propanol to EAL eliminates the P(f) state and lowers the quantum yield of P(c) (0.03) relative to that of P(s) (0.01) but does not significantly change the quantum yield or decay rate constant of P(s), relative to those of holo-EAL. The substrate analogue thus influences the quantum yield at 10(-7) s by changing the cage escape rate from the geminate cob(II)alamin-5'-deoxyadenosyl radical pair state. However, the predicted substrate analogue binding-induced increase in the quantum yield is not observed. It is proposed that the substrate analogue does not induce the radical pair stabilizing changes in the protein that are characteristic of true substrates.

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Year:  2009        PMID: 19072291      PMCID: PMC2642536          DOI: 10.1021/bi801659e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

1.  Protein-coenzyme interactions in adenosylcobalamin-dependent glutamate mutase.

Authors:  M S Huhta; H P Chen; C Hemann; C R Hille; E N Marsh
Journal:  Biochem J       Date:  2001-04-01       Impact factor: 3.857

2.  Time-resolved spectroscopic studies of B(12) coenzymes: a comparison of the primary photolysis mechanism in methyl-, ethyl-, n-propyl-, and 5'-deoxyadenosylcobalamin.

Authors:  Allwyn G Cole; Laurie M Yoder; Joseph J Shiang; Neil A Anderson; Larry A Walker; Mark M Banaszak Holl; Roseanne J Sension
Journal:  J Am Chem Soc       Date:  2002-01-23       Impact factor: 15.419

3.  Internal degrees of freedom, structural motifs, and conformational energetics of the 5'-deoxyadenosyl radical: implications for function in adenosylcobalamin-dependent enzymes. A computational study.

Authors:  Dmitry V Khoroshun; Kurt Warncke; Shyue-Chu Ke; Djamaladdin G Musaev; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

4.  Photolysis and recombination of adenosylcobalamin bound to glutamate mutase.

Authors:  Roseanne J Sension; Allwyn G Cole; Ahmasi D Harris; Christel C Fox; Neal W Woodbury; Su Lin; E Neil G Marsh
Journal:  J Am Chem Soc       Date:  2004-02-18       Impact factor: 15.419

5.  Kinetic and thermodynamic characterization of Co(II)-substrate radical pair formation in coenzyme B12-dependent ethanolamine ammonia-lyase in a cryosolvent system by using time-resolved, full-spectrum continuous-wave electron paramagnetic resonance spectroscopy.

Authors:  Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2008-03-15       Impact factor: 15.419

Review 6.  Radical catalysis in coenzyme B12-dependent isomerization (eliminating) reactions.

Authors:  Tetsuo Toraya
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

7.  The clostridial fermentations of choline and ethanolamine. 1. Preparation and properties of cell-free extracts.

Authors:  C Bradbeer
Journal:  J Biol Chem       Date:  1965-12       Impact factor: 5.157

8.  How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.

Authors:  J Masuda; N Shibata; Y Morimoto; T Toraya; N Yasuoka
Journal:  Structure       Date:  2000-07-15       Impact factor: 5.006

9.  Spectroscopic and computational studies on the adenosylcobalamin-dependent methylmalonyl-CoA mutase: evaluation of enzymatic contributions to Co-C bond activation in the Co3+ ground state.

Authors:  Amanda J Brooks; Monica Vlasie; Ruma Banerjee; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2004-07-07       Impact factor: 15.419

Review 10.  The many faces of vitamin B12: catalysis by cobalamin-dependent enzymes.

Authors:  Ruma Banerjee; Stephen W Ragsdale
Journal:  Annu Rev Biochem       Date:  2003       Impact factor: 23.643

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  6 in total

1.  Resolution and Characterization of Chemical Steps in Enzyme Catalytic Sequences by Using Low-Temperature and Time-Resolved, Full-Spectrum EPR Spectroscopy in Fluid Cryosolvent and Frozen Solution Systems.

Authors:  Miao Wang; Chen Zhu; Meghan Kohne; Kurt Warncke
Journal:  Methods Enzymol       Date:  2015-09-14       Impact factor: 1.600

2.  Entropic origin of cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase.

Authors:  Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

3.  Characterization of protein contributions to cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase by using photolysis in the ternary complex.

Authors:  Wesley D Robertson; Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2011-04-14       Impact factor: 15.419

4.  Protein Configurational States Guide Radical Rearrangement Catalysis in Ethanolamine Ammonia-Lyase.

Authors:  Neslihan Ucuncuoglu; Kurt Warncke
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

5.  Photoinduced Electron Transfer in a Radical SAM Enzyme Generates an S-Adenosylmethionine Derived Methyl Radical.

Authors:  Hao Yang; Stella Impano; Eric M Shepard; Christopher D James; William E Broderick; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2019-09-26       Impact factor: 15.419

6.  The photochemical mechanism of a B12-dependent photoreceptor protein.

Authors:  Roger J Kutta; Samantha J O Hardman; Linus O Johannissen; Bruno Bellina; Hanan L Messiha; Juan Manuel Ortiz-Guerrero; Montserrat Elías-Arnanz; S Padmanabhan; Perdita Barran; Nigel S Scrutton; Alex R Jones
Journal:  Nat Commun       Date:  2015-08-12       Impact factor: 14.919

  6 in total

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