Literature DB >> 19061124

Synthesis and application of molecular probe for detection of hydroxyl radicals produced by Na(125)I and gamma-rays in aqueous solution.

Amarjit Singh1, Yongliang Yang, S James Adelstein, Amin I Kassis.   

Abstract

PURPOSE: To synthesize N-(3-(3-aminopropylamino)propyl)-2-oxo-2H-chromene-3-carboxamide (7), a novel DNA-binding, coumarin-based, fluorescent hydroxylradical ((*)OH) indicator and to assess its quantum efficiency compared with that of coumarin-3-carboxylic acid (1) and N1,N12-bis[2-oxo-2H-chromene-3-carbonyl]- 1,12-diamine-4,9-diazadodecane (9).
MATERIALS AND METHODS: Using computer-generated molecular modeling, 7 and 9 and their respective 7-hydroxylated derivatives 8 and 10 were docked onto DNA dodecamer d(CGCGAATTCGCG)2, the ligand-DNA complexes were energy minimized, and binding free energies and inhibition constants were calculated. Compound 7 was judged an appropriate target molecule and was synthesized. Compounds 1, 7, and 9 were incubated with Na(125)I or irradiated with (137)Cs gamma-rays, and the influence of pH, dose, type of radiation, and the concentration of indicator on fluorescence yield were determined.
RESULTS: Non-fluorescent 7 and 9 are converted to fluorescent, 7-hydroxylated derivatives 8 and 10 after interaction with (*)OH in aqueous solution. For 1, 7, and 9, hydroxylation yield increases linearly with both Na(125)I dose (0-700 x 10(6) decays) and (137)Cs dose (0-11.0 Gy). Fluorescence induction is significantly reduced at acidic pH and the fluorescent quantum yield of 8 is approximately 3 times that of 2 or 10 at pH 7.0. With Na(125)I incubation and gamma-ray irradiation, the fluorescence signal of 7 increases linearly with concentration and saturates at approximately 50 microM.
CONCLUSION: Compound 7 quantifies lower concentrations of (*)OH than do 1 and 9. This detector is therefore likely to be a good reporter of (*)OH produced within a few nanometers of DNA.

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Year:  2008        PMID: 19061124      PMCID: PMC2829608          DOI: 10.1080/09553000802552143

Source DB:  PubMed          Journal:  Int J Radiat Biol        ISSN: 0955-3002            Impact factor:   2.694


  24 in total

1.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

2.  Estimation of life times and diffusion distances of radicals involved in x-ray-induced DNA strand breaks of killing of mammalian cells.

Authors:  R Roots; S Okada
Journal:  Radiat Res       Date:  1975-11       Impact factor: 2.841

3.  The fluorescence of coumarin derivatives as a function of pH. II.

Authors:  R H GOODWIN; F KAVANAGH
Journal:  Arch Biochem Biophys       Date:  1952-04       Impact factor: 4.013

4.  Quantification of radiation-induced hydroxyl radicals within nucleohistones using a molecular fluorescent probe.

Authors:  G M Makrigiorgos; M Folkard; C Huang; E Bump; J Baranowska-Kortylewicz; S K Sahu; B D Michael; A I Kassis
Journal:  Radiat Res       Date:  1994-05       Impact factor: 2.841

5.  Radiation-induced genomic instability: delayed cytogenetic aberrations and apoptosis in primary human bone marrow cells.

Authors:  M A Kadhim; S A Lorimore; K M Townsend; D T Goodhead; V J Buckle; E G Wright
Journal:  Int J Radiat Biol       Date:  1995-03       Impact factor: 2.694

6.  Detection of hydroxyl radicals by aromatic hydroxylation.

Authors:  H Kaur; B Halliwell
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

Review 7.  Polyamines.

Authors:  C W Tabor; H Tabor
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

8.  The natural polyamine spermine functions directly as a free radical scavenger.

Authors:  H C Ha; N S Sirisoma; P Kuppusamy; J L Zweier; P M Woster; R A Casero
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

9.  A method for detection of hydroxyl radicals in the vicinity of biomolecules using radiation-induced fluorescence of coumarin.

Authors:  G M Makrigiorgos; J Baranowska-Kortylewicz; E Bump; S K Sahu; R M Berman; A I Kassis
Journal:  Int J Radiat Biol       Date:  1993-04       Impact factor: 2.694

10.  Why is the hydroxyl radical the only radical that commonly adds to DNA? Hypothesis: it has a rare combination of high electrophilicity, high thermochemical reactivity, and a mode of production that can occur near DNA.

Authors:  W A Pryor
Journal:  Free Radic Biol Med       Date:  1988       Impact factor: 7.376

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  1 in total

1.  DNA Binding Hydroxyl Radical Probes.

Authors:  Vicky J Tang; Katie M Konigsfeld; Joe A Aguilera; Jamie R Milligan
Journal:  Radiat Phys Chem Oxf Engl 1993       Date:  2012-01       Impact factor: 2.858

  1 in total

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