Literature DB >> 19051119

Microcirculation and the physiome projects.

James B Bassingthwaighte1.   

Abstract

The Physiome projects comprise a loosely knit worldwide effort to define the Physiome through databases and theoretical models, with the goal of better understanding the integrative functions of cells, organs, and organisms. The projects involve developing and archiving models, providing centralized databases, and linking experimental information and models from many laboratories into self-consistent frameworks. Increasingly accurate and complete models that embody quantitative biological hypotheses, adhere to high standards, and are publicly available and reproducible, together with refined and curated data, will enable biological scientists to advance integrative, analytical, and predictive approaches to the study of medicine and physiology. This review discusses the rationale and history of the Physiome projects, the role of theoretical models in the development of the Physiome, and the current status of efforts in this area addressing the microcirculation.

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Mesh:

Year:  2008        PMID: 19051119      PMCID: PMC2864115          DOI: 10.1080/10739680802388906

Source DB:  PubMed          Journal:  Microcirculation        ISSN: 1073-9688            Impact factor:   2.628


  25 in total

Review 1.  Intramyocardial influences on blood flow distributions in the myocardial wall.

Authors:  F Kajiya; T Yada; T Matsumoto; M Goto; Y Ogasawara
Journal:  Ann Biomed Eng       Date:  2000-08       Impact factor: 3.934

2.  Green's function methods for analysis of oxygen delivery to tissue by microvascular networks.

Authors:  Timothy W Secomb; Richard Hsu; Eric Y H Park; Mark W Dewhirst
Journal:  Ann Biomed Eng       Date:  2004-11       Impact factor: 3.934

3.  The number and distribution of capillaries in muscles with calculations of the oxygen pressure head necessary for supplying the tissue.

Authors:  A Krogh
Journal:  J Physiol       Date:  1919-05-20       Impact factor: 5.182

4.  Multi-scale computational models of pro-angiogenic treatments in peripheral arterial disease.

Authors:  Feilim Mac Gabhann; James W Ji; Aleksander S Popel
Journal:  Ann Biomed Eng       Date:  2007-04-10       Impact factor: 3.934

5.  Crystalline d-glyceraldehyde-3-phosphate dehydrogenase from rabbit muscle.

Authors:  G T CORI; M W SLEIN; C F CORI
Journal:  J Biol Chem       Date:  1948-04       Impact factor: 5.157

6.  The Microcirculation Physiome Project.

Authors:  A S Popel; A S Greene; C G Ellis; K F Ley; T C Skalak; P J Tonellato
Journal:  Ann Biomed Eng       Date:  1998 Nov-Dec       Impact factor: 3.934

7.  Blood-tissue exchange via transport and transformation by capillary endothelial cells.

Authors:  J B Bassingthwaighte; C Y Wang; I S Chan
Journal:  Circ Res       Date:  1989-10       Impact factor: 17.367

8.  Cardiac endothelial transport and metabolism of adenosine and inosine.

Authors:  L M Schwartz; T R Bukowski; J H Revkin; J B Bassingthwaighte
Journal:  Am J Physiol       Date:  1999-09

Review 9.  The role of theoretical modeling in microcirculation research.

Authors:  Timothy W Secomb; Daniel A Beard; Jefferson C Frisbee; Nicolas P Smith; Axel R Pries
Journal:  Microcirculation       Date:  2008-11       Impact factor: 2.628

10.  BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Authors:  Nicolas Le Novère; Benjamin Bornstein; Alexander Broicher; Mélanie Courtot; Marco Donizelli; Harish Dharuri; Lu Li; Herbert Sauro; Maria Schilstra; Bruce Shapiro; Jacky L Snoep; Michael Hucka
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  5 in total

Review 1.  Harnessing systems biology approaches to engineer functional microvascular networks.

Authors:  Lauren S Sefcik; Jennifer L Wilson; Jason A Papin; Edward A Botchwey
Journal:  Tissue Eng Part B Rev       Date:  2010-06       Impact factor: 6.389

Review 2.  The role of theoretical modeling in microcirculation research.

Authors:  Timothy W Secomb; Daniel A Beard; Jefferson C Frisbee; Nicolas P Smith; Axel R Pries
Journal:  Microcirculation       Date:  2008-11       Impact factor: 2.628

3.  Comparative computational modeling of airflows and vapor dosimetry in the respiratory tracts of rat, monkey, and human.

Authors:  Richard A Corley; Senthil Kabilan; Andrew P Kuprat; James P Carson; Kevin R Minard; Richard E Jacob; Charles Timchalk; Robb Glenny; Sudhakar Pipavath; Timothy Cox; Christopher D Wallis; Richard F Larson; Michelle V Fanucchi; Edward M Postlethwait; Daniel R Einstein
Journal:  Toxicol Sci       Date:  2012-05-12       Impact factor: 4.849

4.  Module-based multiscale simulation of angiogenesis in skeletal muscle.

Authors:  Gang Liu; Amina A Qutub; Prakash Vempati; Feilim Mac Gabhann; Aleksander S Popel
Journal:  Theor Biol Med Model       Date:  2011-04-04       Impact factor: 2.432

Review 5.  A systems biology view of blood vessel growth and remodelling.

Authors:  Elizabeth A Logsdon; Stacey D Finley; Aleksander S Popel; Feilim Mac Gabhann
Journal:  J Cell Mol Med       Date:  2013-11-17       Impact factor: 5.310

  5 in total

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