Literature DB >> 19048316

Accessible haptic technology for drug design applications.

Nicola Zonta1, Ian J Grimstead, Nick J Avis, Andrea Brancale.   

Abstract

Structure-based drug design is a creative process that displays several features that make it closer to human reasoning than to machine automation. However, very often the user intervention is limited to the preparation of the input and analysis of the output of a computer simulation. In some cases, allowing human intervention directly in the process could improve the quality of the results by applying the researcher intuition directly into the simulation. Haptic technology has been previously explored as a useful method to interact with a chemical system. However, the need of expensive hardware and the lack of accessible software have limited the use of this technology to date. Here we are reporting the implementation of a haptic-based molecular mechanics environment aimed for interactive drug design and ligand optimization, using an easily accessible software/hardware combination.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19048316     DOI: 10.1007/s00894-008-0387-8

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  13 in total

1.  Molecular modelling and drug design.

Authors:  E F Meyer; S M Swanson; J A Williams
Journal:  Pharmacol Ther       Date:  2000-03       Impact factor: 12.310

2.  Concept and prototype of protein-ligand docking simulator with force feedback technology.

Authors:  Hiroshi Nagata; Hiroshi Mizushima; Hiroshi Tanaka
Journal:  Bioinformatics       Date:  2002-01       Impact factor: 6.937

Review 3.  Docking and scoring in virtual screening for drug discovery: methods and applications.

Authors:  Douglas B Kitchen; Hélène Decornez; John R Furr; Jürgen Bajorath
Journal:  Nat Rev Drug Discov       Date:  2004-11       Impact factor: 84.694

4.  ZINC--a free database of commercially available compounds for virtual screening.

Authors:  John J Irwin; Brian K Shoichet
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

Review 5.  Computer-based de novo design of drug-like molecules.

Authors:  Gisbert Schneider; Uli Fechner
Journal:  Nat Rev Drug Discov       Date:  2005-08       Impact factor: 84.694

Review 6.  Theoretical and practical considerations in virtual screening: a beaten field?

Authors:  Maria Kontoyianni; Prakash Madhav; Eric Suchanek; William Seibel
Journal:  Curr Med Chem       Date:  2008       Impact factor: 4.530

Review 7.  Indole, a core nucleus for potent inhibitors of tubulin polymerization.

Authors:  Andrea Brancale; Romano Silvestri
Journal:  Med Res Rev       Date:  2007-03       Impact factor: 12.944

8.  Arylthioindoles, potent inhibitors of tubulin polymerization.

Authors:  Gabriella De Martino; Giuseppe La Regina; Antonio Coluccia; Michael C Edler; Maria Chiara Barbera; Andrea Brancale; Elizabeth Wilcox; Ernest Hamel; Marino Artico; Romano Silvestri
Journal:  J Med Chem       Date:  2004-12-02       Impact factor: 7.446

9.  Synthesis and biological evaluation of 2- and 3-aminobenzo[b]thiophene derivatives as antimitotic agents and inhibitors of tubulin polymerization.

Authors:  Romeo Romagnoli; Pier Giovanni Baraldi; Maria Dora Carrion; Carlota Lopez Cara; Delia Preti; Francesca Fruttarolo; Maria Giovanna Pavani; Mojgan Aghazadeh Tabrizi; Manlio Tolomeo; Stefania Grimaudo; Antonella Di Cristina; Jan Balzarini; John A Hadfield; Andrea Brancale; Ernest Hamel
Journal:  J Med Chem       Date:  2007-04-10       Impact factor: 7.446

10.  The Blue Obelisk-interoperability in chemical informatics.

Authors:  Rajarshi Guha; Michael T Howard; Geoffrey R Hutchison; Peter Murray-Rust; Henry Rzepa; Christoph Steinbeck; Jörg Wegner; Egon L Willighagen
Journal:  J Chem Inf Model       Date:  2006 May-Jun       Impact factor: 4.956

View more
  4 in total

Review 1.  Open source molecular modeling.

Authors:  Somayeh Pirhadi; Jocelyn Sunseri; David Ryan Koes
Journal:  J Mol Graph Model       Date:  2016-07-30       Impact factor: 2.518

2.  Design, synthesis and structure-activity relationship of 2-(3',4',5'-trimethoxybenzoyl)-benzo[b]furan derivatives as a novel class of inhibitors of tubulin polymerization.

Authors:  Romeo Romagnoli; Pier Giovanni Baraldi; Maria Dora Carrion; Carlota Lopez Cara; Olga Cruz-Lopez; Manlio Tolomeo; Stefania Grimaudo; Antonietta Di Cristina; Maria Rosaria Pipitone; Jan Balzarini; Nicola Zonta; Andrea Brancale; Ernest Hamel
Journal:  Bioorg Med Chem       Date:  2009-08-20       Impact factor: 3.641

3.  Open Babel: An open chemical toolbox.

Authors:  Noel M O'Boyle; Michael Banck; Craig A James; Chris Morley; Tim Vandermeersch; Geoffrey R Hutchison
Journal:  J Cheminform       Date:  2011-10-07       Impact factor: 5.514

4.  Assemble-And-Match: A Novel Hybrid Tool for Enhancing Education and Research in Rational Structure Based Drug Design.

Authors:  Pouya Tavousi; Reza Amin; Sina Shahbazmohamadi
Journal:  Sci Rep       Date:  2018-01-16       Impact factor: 4.379

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.